| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 17 | June-Reg | Eduardo Perez | | 1B | 21 | 9/11/1969 | 6-4 | 215 | R | R | MLB | 1993-2006 | Florida State University |
| 1 | 34 | June-Reg | Jorge Fabregas | | 3B-C | 21 | 3/13/1970 | 6-3 | 215 | L | R | MLB | 1994-2002 | University of Miami (Florida) |
| 2 | 60 | June-Reg | Chris Pritchett | | 1B | 21 | 1/31/1970 | 6-4 | 212 | L | R | MLB | 1996-2000 | UCLA |
| 3 | 91 | June-Reg | Mark Ratekin | | P | 20 | 11/14/1970 | 6-4 | 215 | R | R | AAA | | Point Loma Nazarene University (Calif.) |
| 4 | 117 | June-Reg | John Donati | | 1B | 18 | 5/4/1973 | 6-1 | 200 | R | R | A+ | | De La Salle High School (Concord,CA) |
| 5 | 143 | June-Reg | David Kennedy | | P-OF | 20 | 9/3/1970 | 6-4 | 225 | R | R | AAA | | Montclair State University |
| 6 | 169 | June-Reg | Brian Williard | | P | 18 | 5/1/1973 | 6-2 | 200 | R | R | A+ | | Dixie Hollins High School (St. Petersburg,FL) |
| 7 | 195 | June-Reg | Chris Turner | | 3B-C | 22 | 3/23/1969 | 6-3 | 200 | R | R | MLB | 1993-2000 | Western Kentucky University |
| 8 | 221** | June-Reg | Kurt Ehmann | | SS | | | | | | | AAA | | Arizona State University |
| 9 | 247 | June-Reg | Mark Sweeney | | OF | 21 | 10/26/1969 | 6-1 | 195 | L | L | MLB | 1995-2008 | University of Maine-Orono |
| 10 | 273 | June-Reg | Gary Hagy | | SS | 22 | 4/7/1969 | 6-3 | 195 | R | R | AA | | UCLA |
| 11 | 299 | June-Reg | Jeff Knox | | P | 18 | 8/1/1972 | 6-2 | 205 | R | R | A | | Deltona High School (Deltona,FL) |
| 12 | 325 | June-Reg | Ken Maire | | p | | | | | | | - | | Eureka High School (Eureka,CA) |
| 13 | 351 | June-Reg | Kyle Sebach | | p | 19 | 9/6/1971 | 6-4 | 175 | R | R | AA | | Grossmont College |
| 14 | 377 | June-Reg | Fred Young | | p | | | 6-3 | 225 | B | R | Rookie | | Hillsborough High School (Tampa,FL) |
| 15 | 403 | June-Reg | Korey Keling | | p | 22 | 11/24/1968 | 6-5 | 210 | R | R | AAA | | University of Oklahoma |
| 16 | 429 | June-Reg | Shawn Purdy | | p | 22 | 7/30/1968 | 6-0 | 205 | R | R | AAA | | University of Miami (Florida) |
| 17 | 455 | June-Reg | Shad Williams | | p | 20 | 3/10/1971 | 6-0 | 185 | R | R | MLB | 1996-1997 | Fresno City College |
| 18 | 481 | June-Reg | John Gledhill | | p | 22 | 2/20/1969 | 6-3 | 195 | R | R | AA | | Oklahoma City University |
| 19 | 507 | June-Reg | Dennis McCaffery | | OF | 22 | 5/27/1969 | 6-2 | 190 | R | R | A+ | | Villanova University |
| 20 | 533** | June-Reg | Kevin Kloek | | p | 20 | 8/15/1970 | 6-3 | 175 | R | R | AAA | | Citrus Junior College |
| 21 | 559** | June-Reg | Keith Stafford | | SS | | | | | | | Rookie | | South Georgia College |
| 22 | 585 | June-Reg | Ron Marin | | OF | | | | | | | - | | Downey High School (Downey,CA) |
| 23 | 611 | June-Reg | Robbie Saitz | | p | | | | | | | A+ | | Fresno State University |
| 24 | 637 | June-Reg | James Ruocchio | | 3B | | | | | | | A- | | C.W. Post Campus/Long Island University |
| 25 | 663 | June-Reg | Jon McGuire | | 1B | | | | | | | - | | McIntosh High School (Peachtree City,GA) |
| 26 | 689** | June-Reg | Scott Schultz | | p | | | | | | | A- | | Broad Run High School (Ashburn,VA) |
| 27 | 715 | June-Reg | Mark Mammola | | p | | | | | | | A | | Pace University |
| 28 | 741 | June-Reg | Frank Greely | | OF | | | | | | | - | | Lassen Junior College |
| 29 | 767 | June-Reg | Lyle Barwick | | C | 20 | 4/23/1971 | 6-0 | 175 | R | R | A | | Delgado Community College |
| 30 | 793** | June-Reg | Mike Parisi | | p | 18 | 6/18/1973 | 6-3 | 195 | R | R | AA | | Arcadia High School (Arcadia,CA) |
| 31 | 819 | June-Reg | Michael Monday | | OF | | | | | | | Rookie | | Orange County Community College |
| 32 | 845 | June-Reg | John Wylie | | p | | | | | | | A+ | | Jacksonville University |
| 33 | 871 | June-Reg | Orlando Palmeiro | | OF | 22 | 1/19/1969 | 5-11 | 175 | L | L | MLB | 1995-2007 | University of Miami (Florida) |
| 34 | 897** | June-Reg | Mike Halperin | | p | 17 | 9/8/1973 | 5-10 | 170 | L | L | AAA | | Barron Collier High School (Naples,FL) |
| 35 | 923 | June-Reg | Glenn Duckett | | SS | | | | | | | - | | Carthage High School (Carthage,MO) |
| 36 | 949 | June-Reg | Rob Plarski | | Of | | | | | | | - | | Poway High School (Poway,CA) |
| 37 | 975 | June-Reg | Carl Dalton | | SS | | | | | | | - | | Cave Spring High School (Roanoke,VA) |
| 38 | 1000 | June-Reg | Richie Blackwell | | p | | | | | | | A- | | Whiteville High School (Whiteville,NC) |
| 39 | 1026 | June-Reg | Enrique Ramos | | p | | | | | | | - | | |
| 40 | 1052** | June-Reg | David Vindivich | | of | | | | | | | A- | | Edmonds Community College |
| 41 | 1077 | June-Reg | O.J. McDuffie | | of | | | | | | | - | | Penn State University |
| 42 | 1102 | June-Reg | Freddie Diaz | | SS | 18 | 9/10/1972 | 5-11 | 175 | B | R | AAA | | Pasadena City College |
| 43 | 1127** | June-Reg | Aaron Boone | | SS-3B | 18 | 3/9/1973 | 6-2 | 200 | R | R | MLB | 1997-2008 | Villa Park High School (Orange,CA) |
| 44 | 1152** | June-Reg | Eric Morgan | | p | 18 | 10/24/1972 | 6-0 | 190 | R | R | A+ | | Cocoa High School (Cocoa,FL) |
| 45 | 1177** | June-Reg | Jacob Cruz | | of | 18 | 1/28/1973 | 6-0 | 179 | L | L | MLB | 1996-2005 | Channel Islands High School (Oxnard,CA) |
| 46 | 1202 | June-Reg | Mike Butler | | p | 20 | 12/14/1970 | 6-0 | 187 | L | L | AAA | | North Carolina State University |
| 47 | 1227 | June-Reg | Eric Mayo | | p | | | | | | | - | | Cherokee High School (Canton,GA) |
| 48 | 1250 | June-Reg | Rudolph Stroud | | SS-3B | | | | | | | - | | |
| 49 | 1272 | June-Reg | Mark Ledinsky | | p-of | | | | | | | Rookie | | Jacksonville University |
| 50 | 1293 | June-Reg | Allan Parker | | SS | 19 | 5/27/1972 | 5-11 | 165 | R | R | A+ | | Polk Community College |
| 51 | 1314 | June-Reg | Browning Nagle | | p | | | | | | | - | | University of Louisville |
| 52 | 1335 | June-Reg | Travis Exurn | | p | | | | | | | - | | Lake Weir High School (Ocala,FL) |
| 53 | 1355** | June-Reg | John Foran | | p | 17 | 10/22/1973 | 6-1 | 185 | R | R | A+ | | Marianna High School (Marianna,FL) |
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