| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 4 | June-Reg | Terry Blocker | $$ | OF | 21 | 8/18/1959 | 6-2 | 195 | L | L | MLB | 1985-1989 | Tennessee State University |
| 2 | 38 | June-Reg | John Christensen | | OF | 20 | 9/5/1960 | 6-0 | 180 | R | R | MLB | 1984-1988 | California State University, Fullerton |
| 4 | 81 | June-Reg | Dave Cochrane | | P-3B | 18 | 1/31/1963 | 6-2 | 180 | B | R | MLB | 1986-1992 | Troy High School (Fullerton,CA) |
| 5 | 107 | June-Reg | Steve Phillips | | SS | | | | | | | AA | | De La Salle High School (Warren,MI) |
| 6 | 133 | June-Reg | Ken Harris | | SS-OF | | | | | | | A+ | | University of La Verne |
| 7 | 159 | June-Reg | Jeff Keeter | | P | | | | | | | - | | Florida State University |
| 8 | 185 | June-Reg | Mark Carreon | | OF | 17 | 7/19/1963 | 6-0 | 195 | R | L | MLB | 1987-1996 | Salpointe High School (Tucson,AZ) |
| 9 | 211 | June-Reg | Rich Webster | | P | | | | | | | A+ | | University of Memphis |
| 10 | 237** | June-Reg | Albert Candelaria | | P | | | | | | | A+ | | Yerba Buena High School (San Jose,CA) |
| 11 | 263 | June-Reg | Steve Walker | | P | | | | | | | AA | | Mount Carmel High School (San Diego,CA) |
| 12 | 289** | June-Reg | Roger Clemens | | P | 18 | 8/4/1962 | 6-4 | 230 | R | R | MLB | 1984-2007 | San Jacinto College-North |
| 13 | 315 | June-Reg | Lenny Dykstra | | OF | 18 | 2/10/1963 | 5-10 | 185 | L | L | MLB | 1985-1996 | Garden Grove High School (Garden Grove,CA) |
| 14 | 341** | June-Reg | Gary Kanwisher | | p | | | | | | | A+ | | Pascack High School (Hillsdale,NJ) |
| 15 | 367 | June-Reg | Larry McNutt | | 1B | | | | | | | A+ | | Jackson State University |
| 16 | 393 | June-Reg | Matt Woellert | | p | 17 | 8/10/1963 | | | | | - | | Moeller High School (Cincinnati,OH) |
| 17 | 419** | June-Reg | Bryan Olden | | 2B | | | | | | | A- | | Beaverton High School (Beaverton,OR) |
| 18 | 445 | June-Reg | Ed Garton | | 3B | | | | | | | A- | | University of Iowa |
| 19 | 471 | June-Reg | Lou Thornton | | 3B | 18 | 4/26/1963 | 6-2 | 185 | L | R | MLB | 1985-1990 | Jefferson Davis High School (Montgomery,AL) |
| 20 | 497 | June-Reg | Mark Boyd | | C | | | | | | | A+ | | McEachern High School (Powder Springs,GA) |
| 21 | 523 | June-Reg | Steve Staton | | p | | | | | | | - | | Long Beach State University |
| 22 | 549 | June-Reg | Matthew Fitts | | p | | | | | | | Rookie | | Lompoc High School (Lompoc,CA) |
| 23 | 574 | June-Reg | Kurt Griffon | | OF | | | | | | | - | | Plaquemine High School (Plaquemine,LA) |
| 24 | 599 | June-Reg | Bob Costello | | C | 20 | 11/22/1960 | 6-3 | 215 | R | R | A | | New York Tech |
| 25 | 624 | June-Reg | Russell Orrick | | OF | 19 | 12/30/1961 | | | L | L | Rookie | | Vintage High School (Napa,CA) |
| 26 | 647 | June-Reg | Randy Hoffman | | OF | | | | | | | Rookie | | Southeastern Louisiana University |
| 27 | 670 | June-Reg | James Oates | | p | | | | | | | A | | Huntington College (Ind.) |
| 28 | 692 | June-Reg | Joe Licata | | OF-3B | | | | | | | A- | | Florida State University |
| 29 | 714 | June-Reg | Gary Heien | | p | 18 | 1/2/1963 | 6-0 | 187 | R | R | - | | O'Fallon High School (O'Fallon,IL) |
| 30 | 734 | June-Reg | Michael Franks | | 2B | | | | | | | A- | | Loyola Marymount University |
| 31 | 752 | June-Reg | Mike Harlander | | p | | | | | | | A- | | University of Nebraska |
| 32 | 769 | June-Reg | Steve DeMattles | | C | | | | | | | A- | | Ithaca College |
| 33 | 785** | June-Reg | Luis Medina | | OF | 18 | 3/26/1963 | 6-4 | 200 | R | L | MLB | 1988-1991 | Warren High School (Downey,CA) |
| 34 | 799 | June-Reg | Bruce Kastelic | | SS | | | | | | | AA | | Oklahoma State University |
| 35 | 811 | June-Reg | Lou Martinez | | C | 4 | 11/1/1976 | 6-0 | 175 | R | R | AAA | - | DeWitt Clinton High School (Bronx,NY) |
| 36 | 820 | June-Reg | Darrell Rodgers | | p | | | | | | | AA | | Eisenhower High School (Lawton,OK) |
| 37 | 829 | June-Reg | Larry Czeszewski | | C | | | | | | | A | | Midwestern State University |
| 38 | 836 | June-Reg | Scott Holiday | | Of | | | | | | | - | | Middle Tennessee State University |
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| 1 | 14 | June-Sec | John Felce | | OF | | | | | | | - | | College of the Canyons |
| 2 | 39 | June-Sec | Gail Arnold | | P | | | | | | | A- | | Brigham Young University |
| 3 | 60** | June-Sec | Greg Griffin | | OF | | | | | | | AA | | |
| 4 | 71 | June-Sec | Kevin Slwinski | | OF | | | | | | | - | | Orange County Community College |
| 5 | 76 | June-Sec | Greg Cary | | P | | | | | | | - | | Chabot College |
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| 1 | 3 | Jan-Reg | Randy Milligan | | OF | 19 | 11/27/1961 | 6-2 | 225 | R | R | MLB | 1987-1994 | San Diego Mesa College |
| 2 | 29 | Jan-Reg | Steve Ray | | P | | | | | | | A+ | | Southwestern Community College |
| 3 | 55 | Jan-Reg | Rey Tolentino | | P | | | | | | | - | | Chaffey College |
| 4 | 81** | Jan-Reg | Dodd Hook | | 1B | | | | | | | - | | Indian Hills Community College-Centerville |
| 5 | 107 | Jan-Reg | Jim Cazet | | SS | | | | | | | Rookie | | Modesto Junior College |
| 6 | 133** | Jan-Reg | Greg Cary | | P | | | | | | | - | | Chabot College |
| 7 | 158 | Jan-Reg | Craig Walter | | P | 19 | 11/11/1961 | 5-11 | 175 | R | R | A+ | | Waldorf College (Iowa) |
| 8 | 183 | Jan-Reg | Tim Hampton | | P | | | | | | | A+ | | Modesto Junior College |
| 9 | 202 | Jan-Reg | Brian Pate | | iF-Of | | | | | | | A+ | | Columbia State Community College |
| 10 | 220 | Jan-Reg | William Bankhead | | 3B | | | | | | | - | | Green River Community College |
| 11 | 237 | Jan-Reg | Roger Lee | | OF-1B | | | | | | | - | | Garden City Community College |
| 12 | 250** | Jan-Reg | Greg Shirley | | C | | | | | | | - | | Alabama Christian College |
| 13 | 262 | Jan-Reg | Robert Smith | | iF-Of | | | | | | | A | | |
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| 1 | 9 | Jan-Sec | Herm Winningham | | OF | 19 | 12/1/1961 | 5-11 | 175 | L | R | MLB | 1984-1992 | DeKalb Junior College |
| 2 | 35** | Jan-Sec | Billy Irions | | P | | | | | | | A | | Seminole Junior College |
| 3 | 60** | Jan-Sec | Nick Esposito | | P | | | | | | | A+ | | Los Medanos (Calif.) Junior College |
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