| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 35 | 1037 | June-Reg | Anthony Stoval | Kansas City Royals | P | - | H | Kailua (Kailua,HI) | SF | HI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1038 | June-Reg | Joshua Banda | Colorado Rockies | 1B | A- | 2004-2012 | C | California Baptist University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1039 | June-Reg | Michael Ross | Tampa Bay Rays | 2B | A- | 2007-2008 | C | Northwest Mississippi Community College | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1040 | June-Reg | Josue Peley | Pittsburgh Pirates | SS | AA | 2007-2012 | C | Seminole State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1041 | June-Reg | Alex Meneses | Seattle Mariners | SS | AAA | 2006-2008 | C | Barry University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1042 | June-Reg | Paul Hammond | Detroit Tigers | P | A+ | 2002-2007 | C | University of Michigan | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1043 | June-Reg | Nick Buss ** | Los Angeles Dodgers | LF | AAA | 2006-2013 | C | San Diego Mesa College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1044 | June-Reg | John Touchton | Cincinnati Reds | P | NCAA | 2007-2009 | H | Kingwood (Kingwood,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1045 | June-Reg | Matt Drummond ** | Baltimore Orioles | P | A- | 2007-2011 | H | Paso Robles (Paso Robles,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1046 | June-Reg | Adam Cowart | San Francisco Giants | P | AA | 2005-2011 | C | Kansas State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1047 | June-Reg | Casey Whitmer ** | Arizona Diamondbacks | P | A- | 2007-2008 | H | Kilgore (Kilgore,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1048 | June-Reg | Brian Nelson | Texas Rangers | OF | - | C | Corban College | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1049 | June-Reg | Marquez Smith ** | Chicago Cubs | 3B | AAA | 2006-2013 | C | Clemson University | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1050 | June-Reg | John Zinnicker | Toronto Blue Jays | P | A+ | 2003-2007 | C | St. Bonaventure University | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1051 | June-Reg | D'Vontrey Richardson ** | Washington Nationals | CF | A+ | 2007-2011 | H | Lee County (Leesburg,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1052 | June-Reg | Sanduan Dubose | Milwaukee Brewers | 3B | - | C | Stillman College | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1053 | June-Reg | Joseph Cruz ** | San Diego Padres | P | AA | 2007-2012 | H | South Hills (Covina,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1054 | June-Reg | James Newman | New York Mets | 2B | RK | 2006-2007 | C | Erskine College | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1055 | June-Reg | Christopher Evans | Florida Marlins | C | - | H | Serrano (Phelan,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1056 | June-Reg | Robby Donovan ** | Minnesota Twins | P | A+ | 2007-2012 | H | Royal Palm Beach (West Palm Beach,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1057 | June-Reg | Rashad Taylor | Philadelphia Phillies | CF | - | C | Skyline College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1058 | June-Reg | Carlos Hernandez | Oakland Athletics | P | AAA | 2007-2013 | C | West Valley College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1059 | June-Reg | Patrick Allen | Houston Astros | RF | - | C | Everett Community College | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1060 | June-Reg | Aryo Fleming | Atlanta Braves | P | - | H | Central (Baton Rouge,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1061 | June-Reg | Alan Brech | Cleveland Indians | P | A | 2004-2007 | C | Bowling Green State University | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1062 | June-Reg | Aaron Cook | Los Angeles Angels | P | AA | 2005-2011 | C | University of Tampa | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1063 | June-Reg | Jeremy Rahman | Boston Red Sox | CF | - | H | Hazelwood Central (Florissant,MO) | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2006 | 35 | 1064 | June-Reg | David Van Ostrand | New York Yankees | 3B | NCAA | 2008-2010 | C | Allan Hancock College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1065 | June-Reg | Adam Heisler ** | Chicago White Sox | CF | A+ | 2009-2013 | H | Baker (Mobile,AL) | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 35 | 1066 | June-Reg | Jim Rapoport | St. Louis Cardinals | CF | AAA | 2004-2012 | C | Stanford University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |