| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 17 | 497 | June-Reg | Matt Morizio | Kansas City Royals | C | A+ | 2003-2010 | C | Northeastern University | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 498 | June-Reg | Michael Gibbs | Colorado Rockies | P | RK | 2005-2008 | C | Virginia Commonwealth University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 499 | June-Reg | Ryan Thornton | Tampa Bay Rays | CF | NCAA | 2006-2009 | C | American River College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 500 | June-Reg | Michael Crotta | Pittsburgh Pirates | P | MLB | 2004-2013 | C | Florida Atlantic University | SF | FL | -- | -- | -- | -- | -- | -- | -- | 0 | 1 | 9.28 | 0 | 11 | 7 | 0 |
| 2006 | 17 | 501 | June-Reg | Dan Runzler ** | Seattle Mariners | P | MLB | 2005-2013 | C | University of California-Riverside | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 502 | June-Reg | Ben Petralli ** | Detroit Tigers | C | Ind | 2008-2010 | C | Sacramento City College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 503 | June-Reg | Michael Rivera | Los Angeles Dodgers | 2B | AAA | 2003-2007 | C | University of Tennessee | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 504 | June-Reg | Chris Heisey | Cincinnati Reds | CF | MLB | 2004-2013 | C | Messiah College | SF | PA | 827 | 35 | 7 | 33 | 102 | 13 | .259 | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 505 | June-Reg | Tony Watson ** | Baltimore Orioles | P | MLB | 2004-2013 | C | University of Nebraska | SF | NE | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 506 | June-Reg | Kevin Pucetas | San Francisco Giants | P | AAA | 2006-2013 | C | Limestone College | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 507 | June-Reg | Brett Reynolds | Arizona Diamondbacks | P | RK | 2006-2008 | C | University of Missouri | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 508 | June-Reg | John Maschino | Texas Rangers | P | Ind | 2008-2009 | C | Seminole State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 509 | June-Reg | Keoni Ruth ** | Chicago Cubs | 2B | AAA | 2004-2010 | C | University of San Diego | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 510 | June-Reg | Kyle Ginley | Toronto Blue Jays | P | A+ | 2006-2009 | C | St. Petersburg College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 511 | June-Reg | Erik Arnesen | Washington Nationals | P | AAA | 2006-2012 | C | Grove City College | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 512 | June-Reg | Aaron Tullo ** | Milwaukee Brewers | P | AAA | 2008-2012 | H | St. Petersburg (St. Petersburg,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 513 | June-Reg | Tyler Mead | San Diego Padres | P | A- | 2006-2009 | H | Skyview (Vancouver,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 514 | June-Reg | Stephen Puhl | New York Mets | C | A | 2006-2008 | C | St. Edward's University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 515 | June-Reg | Hunter Mense | Florida Marlins | RF | AAA | 2004-2012 | C | University of Missouri | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 516 | June-Reg | Andy Oliver ** | Minnesota Twins | P | MLB | 2007-2013 | H | Vermilion (Vermilion,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 517 | June-Reg | Jay Miller | Philadelphia Phillies | LF | A+ | 2003-2008 | C | Washington State University | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 518 | June-Reg | Mike Affronti | Oakland Athletics | SS | AAA | 2003-2010 | C | Le Moyne College | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 519 | June-Reg | Justin Stiver | Houston Astros | P | A- | 2003-2006 | C | Florida Gulf Coast University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 520 | June-Reg | Clayton McMillan | Atlanta Braves | P | A | 2007-2009 | C | Texarkana College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 521 | June-Reg | Kyle Harper | Cleveland Indians | P | RK | 2004-2007 | C | Orange Coast College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 522 | June-Reg | Tadd Brewer | Los Angeles Angels | 2B | A+ | 2005-2008 | C | Lipscomb University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 523 | June-Reg | Josh Reddick | Boston Red Sox | LF | MLB | 2006-2013 | C | Middle Georgia College | SF | GA | 986 | 54 | 9 | 42 | 122 | 13 | .244 | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 524 | June-Reg | David Robertson | New York Yankees | P | MLB | 2005-2012 | C | University of Alabama | SF | AL | -- | -- | -- | -- | -- | -- | -- | 16 | 13 | 2.95 | 5 | 263 | 351 | 0 |
| 2006 | 17 | 525 | June-Reg | Kylee Hash | Chicago White Sox | C | RK | 2006-2010 | H | Basic (Henderson,NV) | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 17 | 526 | June-Reg | Nathan Southard | St. Louis Cardinals | CF | A+ | 2003-2008 | C | Tulane University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |