| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2006 | 13 | 377 | June-Reg | Kurt Mertins | Kansas City Royals | 2B | AAA | 2006-2012 | C | College of the Desert | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 378 | June-Reg | Spence Nagy | Colorado Rockies | IF | A | 2006-2008 | C | Tallahassee Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 379 | June-Reg | Mike Minor ** | Tampa Bay Rays | P | MLB | 2007-2013 | H | Forrest (Lewisburg,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 380 | June-Reg | Brandon Holden | Pittsburgh Pirates | P | A | 2007-2010 | H | Douglas (Parkland,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 381 | June-Reg | Joe Kantakevich | Seattle Mariners | P | A+ | 2004-2008 | C | College of William and Mary | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 382 | June-Reg | Angel Castro | Detroit Tigers | P | AAA | 2007-2013 | C | Western Oklahoma State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 383 | June-Reg | Nik Akins ** | Los Angeles Dodgers | SS | A+ | 2009-2012 | H | Los Angeles (Los Angeles,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 384 | June-Reg | Kevin Gunter | Cincinnati Reds | P | A+ | 2005-2010 | C | Old Dominion University | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 385 | June-Reg | Ryan Ouellette | Baltimore Orioles | P | AA | 2005-2010 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 386 | June-Reg | Brad Boyer | San Francisco Giants | 2B | AAA | 2003-2012 | C | University of Arizona | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 387 | June-Reg | John Hester | Arizona Diamondbacks | C | MLB | 2003-2013 | C | Stanford University | SF | CA | 208 | 10 | 0 | 6 | 15 | 1 | .216 | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 388 | June-Reg | Kevin Angelle ** | Texas Rangers | P | A- | 2009-2010 | H | Bridge City (Bridge City,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 389 | June-Reg | Matt Camp | Chicago Cubs | CF | AAA | 2003-2011 | C | North Carolina State University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 390 | June-Reg | Mikal Garbarino | Toronto Blue Jays | CF | RK | 2006-2006 | H | San Dimas (San Dimas,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 391 | June-Reg | Hassan Pena | Washington Nationals | P | AAA | 2007-2012 | C | Palm Beach State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 392 | June-Reg | Chris Toneguzzi | Milwaukee Brewers | P | A | 2003-2007 | C | Purdue University | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 393 | June-Reg | Mike Epping | San Diego Padres | CF | AAA | 2005-2010 | C | University of New Orleans | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 394 | June-Reg | Daniel Murphy | New York Mets | 3B | MLB | 2004-2012 | C | Jacksonville University | SF | FL | 1601 | 115 | 12 | 26 | 194 | 19 | .292 | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 395 | June-Reg | Drew Saylor | Florida Marlins | 2B | A- | 2003-2010 | C | Kent State University | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 396 | June-Reg | Aaron Senne ** | Minnesota Twins | RF | A+ | 2007-2013 | H | Mayo (Rochester,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 397 | June-Reg | Zach Penprase | Philadelphia Phillies | SS | A | 2004-2012 | C | Mississippi Valley State University | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 398 | June-Reg | Ben Jukich | Oakland Athletics | P | AAA | 2006-2010 | C | Dakota Wesleyan University | SF | SD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 399 | June-Reg | Chris Salamida | Houston Astros | P | AA | 2006-2012 | C | SUNY-Oneonta | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 400 | June-Reg | Joseph Johnson | Atlanta Braves | P | A | 2006-2007 | C | Louisburg College | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 401 | June-Reg | Brant Rustich ** | Cleveland Indians | P | A+ | 2004-2010 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 402 | June-Reg | Blake Holler | Los Angeles Angels | P | A+ | 2004-2007 | C | Stanford University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 403 | June-Reg | Jordan Craft | Boston Red Sox | P | A | 2006-2009 | C | Dallas Baptist University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 404 | June-Reg | Daniel McCutchen | New York Yankees | P | MLB | 2002-2013 | C | University of Oklahoma | SF | OK | 30 | 0 | 0 | 0 | 1 | 1 | .067 | 8 | 11 | 4.77 | 0 | 189 | 104 | 15 |
| 2006 | 13 | 405 | June-Reg | Tyson Corley | Chicago White Sox | P | AAA | 2005-2012 | C | South Mountain Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2006 | 13 | 406 | June-Reg | Travis Mitchell | St. Louis Cardinals | CF | A | 2006-2011 | H | Parkway Central (Chesterfield,MO) | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |