| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2004 | 1 | 16 | June-Reg | David Purcey | Toronto Blue Jays | P | MLB | 2002-2013 | C | University of Oklahoma | SF | OK | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 6 | 12 | 5.38 | 1 | 181 | 151 | 21 |
| 2004 | 1 | 32 | June-Reg | Zach Jackson | Toronto Blue Jays | P | MLB | 2002-2012 | C | Texas A&M University | SF | TX | 9 | 0 | 0 | 0 | 0 | 0 | .111 | 4 | 5 | 5.81 | 0 | 105 | 63 | 17 |
| 2004 | 2 | 57 | June-Reg | Curtis Thigpen | Toronto Blue Jays | C | MLB | 2002-2008 | C | University of Texas | SF | TX | 118 | 5 | 0 | 1 | 12 | 2 | .229 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 83 | June-Reg | Adam Lind | Toronto Blue Jays | 1B | MLB | 2003-2013 | C | University of South Alabama | SF | AL | 2652 | 146 | 9 | 117 | 412 | 5 | .265 | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 3 | 87 | June-Reg | Danny Hill | Toronto Blue Jays | P | AA | 2003-2006 | C | University of Missouri | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 4 | 117 | June-Reg | Casey Janssen | Toronto Blue Jays | P | MLB | 2001-2013 | C | UCLA | SF | CA | 3 | 0 | 0 | 0 | 0 | 0 | .000 | 22 | 20 | 3.60 | 31 | 395 | 290 | 22 |
| 2004 | 5 | 147 | June-Reg | Ryan Klosterman | Toronto Blue Jays | SS | AAA | 2001-2011 | C | Vanderbilt University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 6 | 177 | June-Reg | Cory Patton | Toronto Blue Jays | OF | A+ | 2003-2012 | C | Texas A&M University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 7 | 207 | June-Reg | Randy Dicken | Toronto Blue Jays | P | A | 2004-2008 | C | Shippensburg University of Pennsylvania | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 8 | 237 | June-Reg | Chip Cannon | Toronto Blue Jays | 1B | AAA | 2001-2009 | C | The Citadel | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 9 | 267 | June-Reg | Joey Metropoulos | Toronto Blue Jays | 1B | A | 2002-2010 | C | USC | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 10 | 297 | June-Reg | Brian Hall | Toronto Blue Jays | 2B | A- | 2001-2006 | C | Stanford University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 11 | 327 | June-Reg | Kristian Bell | Toronto Blue Jays | P | AA | 2004-2009 | C | Blinn College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 12 | 357 | June-Reg | Eric Nielsen | Toronto Blue Jays | OF | AAA | 2002-2008 | C | UNLV | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 13 | 387 | June-Reg | Kyle Yates | Toronto Blue Jays | P | AA | 2004-2009 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 14 | 417 | June-Reg | Jordan Timm | Toronto Blue Jays | P | A+ | 2004-2006 | C | University of Wisconsin-Oshkosh | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 15 | 447 | June-Reg | Mike MacDonald | Toronto Blue Jays | P | AAA | 2002-2012 | C | University of Maine | SF | ME | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 16 | 477 | June-Reg | Jose Castro ** | Toronto Blue Jays | SS | AAA | 2005-2012 | H | Puerto Rico Baseball Acad (Gurabo,PR) | SF | PR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 17 | 507 | June-Reg | Michael Cooper ** | Toronto Blue Jays | P | AA | 2003-2007 | C | Santa Ana College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 18 | 537 | June-Reg | Joey McLaughlin | Toronto Blue Jays | P | A | 2001-2006 | C | Oklahoma City University | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 19 | 567 | June-Reg | Aaron Mathews | Toronto Blue Jays | OF | AAA | 2002-2012 | C | Oregon State University | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 20 | 597 | June-Reg | Bobby Scott | Toronto Blue Jays | P | - | H | Stelly's (Saanich,BC) | SF | BC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 21 | 627 | June-Reg | Scott Roy | Toronto Blue Jays | P | A | 2001-2006 | C | University of Hartford | SF | CT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 22 | 657 | June-Reg | Joe Wice | Toronto Blue Jays | P | A | 2005-2008 | C | Dixie State College of Utah | SF | UT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 23 | 687 | June-Reg | Daryl Harang | Toronto Blue Jays | P | AA | 2001-2010 | C | San Diego State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 24 | 717 | June-Reg | Jesse Litsch | Toronto Blue Jays | P | MLB | 2005-2011 | C | South Florida Community College | SF | FL | 5 | 0 | 0 | 0 | 0 | 0 | .000 | 27 | 27 | 4.16 | 1 | 418 | 239 | 67 |
| 2004 | 25 | 747 | June-Reg | Jason Armstrong | Toronto Blue Jays | SS | A+ | 2004-2006 | C | Trinity University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 26 | 777 | June-Reg | Brian Bormaster | Toronto Blue Jays | C | AAA | 2001-2007 | C | Tulane University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 27 | 807 | June-Reg | Casey McKenzie | Toronto Blue Jays | P | A | 2004-2006 | C | University of Tampa | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 28 | 837 | June-Reg | Josh Lex | Toronto Blue Jays | C | A+ | 2004-2008 | C | Oral Roberts University | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 29 | 867 | June-Reg | Mike Macaluso | Toronto Blue Jays | SS | A | 2002-2004 | C | University of South Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 30 | 897 | June-Reg | Cory Hahn | Toronto Blue Jays | P | A- | 2001-2007 | C | Tulane University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 31 | 927 | June-Reg | Paul Franko | Toronto Blue Jays | 3B | A+ | 2005-2008 | C | Scottsdale Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 32 | 957 | June-Reg | Aaron Tressler | Toronto Blue Jays | P | AAA | 2002-2008 | C | Penn State University | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 33 | 987 | June-Reg | Greg Powers | Toronto Blue Jays | 3B | A- | 2003-2004 | C | University of California-Santa Barbara | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 34 | 1017 | June-Reg | Derek Tate | Toronto Blue Jays | P | A+ | 2003-2006 | C | University of San Francisco | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 35 | 1047 | June-Reg | Charlie Anderson | Toronto Blue Jays | OF | A | 2004-2006 | C | University of Detroit Mercy | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 36 | 1077 | June-Reg | David Hicks | Toronto Blue Jays | 1B | A | 2001-2006 | C | North Carolina State University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 37 | 1107 | June-Reg | Anthony Garibaldi | Toronto Blue Jays | 3B | A+ | 2003-2007 | C | Southeastern Louisiana University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 38 | 1137 | June-Reg | Ben Humphrey | Toronto Blue Jays | 1B | NCAA | 2006-2007 | C | Olney Central College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 39 | 1167 | June-Reg | Matt Trink | Toronto Blue Jays | P | NCAA | 2006-2006 | C | Yavapai College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 40 | 1197 | June-Reg | Jacob Vasquez | Toronto Blue Jays | 1B | - | C | Santa Ana College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 41 | 1227 | June-Reg | Derek Feldkamp ** | Toronto Blue Jays | P | AA | 2003-2009 | C | University of Michigan | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 42 | 1256 | June-Reg | Jon Hesketh ** | Toronto Blue Jays | P | A+ | 2009-2011 | H | Brookswood Secondary (Langley,BC) | SF | BC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 43 | 1285 | June-Reg | Chad Beck ** | Toronto Blue Jays | P | MLB | 2004-2013 | C | Panola College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 44 | 1314 | June-Reg | Edward Cannon | Toronto Blue Jays | P | NCAA | 2003-2004 | C | Florida State University | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 45 | 1343 | June-Reg | Rodrick Ratliff | Toronto Blue Jays | P | - | C | Labette Community College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 46 | 1372 | June-Reg | Brok Butcher ** | Toronto Blue Jays | P | AA | 2004-2008 | C | Santa Barbara City College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 47 | 1401 | June-Reg | Colin Quarles | Toronto Blue Jays | P | - | H | Melbourne (Melbourne,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 48 | 1430 | June-Reg | Ryan Harris | Toronto Blue Jays | SS | - | C | San Bernardino Valley College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2004 | 49 | 1458 | June-Reg | Brad Miller ** | Toronto Blue Jays | 1B | A+ | 2003-2010 | C | Ball State University | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2004 | 50 | 1486 | June-Reg | Jordan Lennerton ** | Toronto Blue Jays | 1B | AAA | 2007-2013 | H | Brookswood Secondary (Langley,BC) | SF | BC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |