| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2003 | 1 | 21 | June-Reg | Matt Moses | Minnesota Twins | 3B | AAA | 2003-2009 | H | Mills Godwin (Richmond,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 2 | 58 | June-Reg | Scott Baker | Minnesota Twins | P | MLB | 2001-2012 | C | Oklahoma State University | SF | OK | 25 | 1 | 0 | 0 | 0 | 0 | .120 | 63 | 48 | 4.15 | 0 | 958 | 770 | 159 |
| 2003 | 3 | 88 | June-Reg | Johnny Woodard | Minnesota Twins | 1B | A+ | 2003-2012 | C | Cosumnes River College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 4 | 118 | June-Reg | David Shinskie | Minnesota Twins | P | AA | 2003-2009 | H | Mount Carmel Area (Mount Carmel,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 5 | 148 | June-Reg | Brandon McArthur | Minnesota Twins | SS | Ind | 2005-2009 | H | Armwood (Seffner,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 6 | 178 | June-Reg | Errol Simonitsch | Minnesota Twins | P | AA | 2001-2008 | C | Gonzaga University | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 7 | 208 | June-Reg | Chris Schutt | Minnesota Twins | P | AA | 2003-2008 | C | Cornell University | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 8 | 238 | June-Reg | Brandon McConnell | Minnesota Twins | P | A+ | 2003-2008 | H | Foothill (Palo Cedro,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 9 | 268 | June-Reg | Kevin Culpepper | Minnesota Twins | P | A | 2002-2007 | C | Georgia Southern University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 10 | 298 | June-Reg | Chris Marini | Minnesota Twins | P | A+ | 2002-2006 | C | Glendale Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 11 | 328 | June-Reg | Ryan Schroyer ** | Minnesota Twins | P | AAA | 2001-2006 | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 12 | 358 | June-Reg | Steven Duguay | Minnesota Twins | P | A+ | 2003-2006 | C | Gulf Coast State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 13 | 388 | June-Reg | David Winfree | Minnesota Twins | 1B | AAA | 2003-2012 | H | First Colonial (Virginia Beach,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 14 | 418 | June-Reg | Levale Speigner | Minnesota Twins | P | MLB | 2000-2010 | C | Auburn University | SF | AL | 4 | 0 | 0 | 0 | 0 | 0 | .000 | 2 | 4 | 9.19 | 0 | 48 | 20 | 6 |
| 2003 | 15 | 448 | June-Reg | Trey Shields ** | Minnesota Twins | P | A | 2005-2006 | C | Gulf Coast State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 16 | 478 | June-Reg | Michael Rogers | Minnesota Twins | P | RK | 2004-2004 | H | Del City (Oklahoma City,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 17 | 508 | June-Reg | Danny Vais | Minnesota Twins | P | A+ | 2004-2008 | C | Seward County Community College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 18 | 538 | June-Reg | Eli Tintor | Minnesota Twins | C | A+ | 2003-2009 | H | Hibbing (Hibbing,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 19 | 568 | June-Reg | Jon Uhl | Minnesota Twins | P | A | 2002-2005 | C | University of South Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 20 | 598 | June-Reg | Gregory Najac | Minnesota Twins | C | RK | 2003-2004 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 21 | 628 | June-Reg | Robert Leffler ** | Minnesota Twins | C | A- | 2007-2008 | H | Dunedin (Dunedin,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 22 | 658 | June-Reg | Joe Gault | Minnesota Twins | P | RK | 2003-2006 | H | Canyon (Canyon Country,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 23 | 688 | June-Reg | Charles Smith | Minnesota Twins | P | - | H | Casa Roble (Orangevale,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 24 | 718 | June-Reg | Patrick Ortiz | Minnesota Twins | SS | RK | 2003-2004 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 25 | 748 | June-Reg | John Gaub ** | Minnesota Twins | P | MLB | 2004-2012 | H | South St. Paul (South St. Paul,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 26 | 778 | June-Reg | Jason Bowlin | Minnesota Twins | P | RK | 2003-2007 | C | Volunteer State Community College | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 27 | 808 | June-Reg | Peter Taraskevich | Minnesota Twins | P | - | H | American Heritage (Plantation,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 28 | 838 | June-Reg | Josh Oslin | Minnesota Twins | P | NCAA | 2004-2007 | H | Mora (Mora,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 29 | 868 | June-Reg | Bo Pettit | Minnesota Twins | P | A | 1999-2005 | C | Louisiana State University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 30 | 898 | June-Reg | Josh Gray | Minnesota Twins | P | A+ | 2001-2006 | C | Lamar University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 31 | 928 | June-Reg | Kris Lankford | Minnesota Twins | P | RK | 2003-2004 | C | Western Oklahoma State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 32 | 958 | June-Reg | Nicholas Bleau ** | Minnesota Twins | P | - | H | Ste. Elizabeth-Anne (Mercier,QC) | SF | QC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 33 | 988 | June-Reg | Yvenson Bernard | Minnesota Twins | OF | - | H | Boca Raton Community (Boca Raton,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 34 | 1018 | June-Reg | Quentin Andes | Minnesota Twins | P | NCAA | 2004-2006 | H | Cibola (Albuquerque,NM) | SF | NM | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 35 | 1048 | June-Reg | Phillip Utley | Minnesota Twins | P | NCAA | 2006-2008 | H | Jackson Central-Merry (Jackson,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 36 | 1078 | June-Reg | Marquez Smith ** | Minnesota Twins | 3B | AAA | 2006-2013 | H | Forest (Ocala,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 37 | 1108 | June-Reg | Heath Anderson | Minnesota Twins | C | A | 2003-2005 | C | Pensacola State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 38 | 1138 | June-Reg | Travis Metcalf ** | Minnesota Twins | 3B | MLB | 2002-2011 | C | University of Kansas | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 39 | 1168 | June-Reg | Jesse Collins | Minnesota Twins | C | RK | 2000-2004 | C | University of North Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 40 | 1198 | June-Reg | Adam Hawes | Minnesota Twins | P | A+ | 2002-2008 | C | Connors State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 41 | 1228 | June-Reg | John Rumsey | Minnesota Twins | OF | RK | 2003-2003 | C | San Diego Mesa College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 42 | 1257 | June-Reg | Mitchell Zamojc | Minnesota Twins | OF | A+ | 2004-2005 | C | University of British Columbia | SF | BC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 43 | 1286 | June-Reg | Travis Kalin | Minnesota Twins | SS | RK | 2003-2005 | H | Bishop Moore (Orlando,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 44 | 1314 | June-Reg | Larry Jones | Minnesota Twins | OF | AAA | 1983-2005 | H | Baldwin County (Bay Minette,AL) | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 45 | 1341 | June-Reg | Steve Pearce ** | Minnesota Twins | SS | MLB | 2004-2013 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 46 | 1368 | June-Reg | Brant Rustich ** | Minnesota Twins | P | A+ | 2004-2010 | H | Grossmont (El Cajon,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 47 | 1395 | June-Reg | Clayton Trenary ** | Minnesota Twins | OF | - | C | Central Florida Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2003 | 48 | 1422 | June-Reg | Jared Swart | Minnesota Twins | P | NCAA | 2006-2006 | H | Cimarron (Lahoma,OK) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 49 | 1448 | June-Reg | Michael Hollimon ** | Minnesota Twins | SS | MLB | 2002-2012 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2003 | 50 | 1474 | June-Reg | Andy Delagarza | Minnesota Twins | P | A- | 2004-2007 | H | Norwell (Ossian,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |