| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2001 | 2 | 45 | June-Reg | Scott Tyler | Minnesota Twins | P | AA | 2001-2008 | H | Downington West (Downington,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 46 | June-Reg | Andy Sisco | Chicago Cubs | P | MLB | 2001-2012 | H | Eastlake (Sammamish,WA) | SF | WA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 3 | 9 | 5.18 | 1 | 148 | 141 | 0 |
| 2001 | 2 | 47 | June-Reg | Jon Switzer | Tampa Bay Rays | P | MLB | 1999-2009 | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | 2 | 4 | 6.20 | 0 | 70 | 46 | 0 |
| 2001 | 2 | 48 | June-Reg | Kelly Shoppach | Boston Red Sox | C | MLB | 1999-2013 | C | Baylor University | SF | TX | 1507 | 85 | 2 | 67 | 207 | 1 | .226 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 49 | June-Reg | Rene Rivera | Seattle Mariners | C | MLB | 2001-2013 | H | -- | SF | 254 | 10 | 0 | 4 | 15 | 1 | .193 | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 2 | 50 | June-Reg | Don Levinski | Montreal Expos | P | A+ | 2001-2007 | H | Weimar (Weimar,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 51 | June-Reg | Jake Dittler | Cleveland Indians | P | AAA | 2001-2011 | H | Green Valley (Henderson,NV) | SF | NV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 52 | June-Reg | J.P. Howell ** | Atlanta Braves | P | MLB | 2002-2013 | H | Jesuit (Carmichael,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 53 | June-Reg | Roscoe Crosby | Kansas City Royals | OF | - | H | Union (Union,SC) | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 2 | 54 | June-Reg | Mike Rodriguez | Houston Astros | OF | AAA | 1999-2009 | C | University of Miami | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 55 | June-Reg | Preston Larrison | Detroit Tigers | P | AAA | 1999-2009 | C | University of Evansville | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 56 | June-Reg | J.J. Hardy | Milwaukee Brewers | IF | MLB | 2001-2013 | H | Sabino (Tucson,AZ) | SF | AZ | 3605 | 180 | 13 | 133 | 451 | 6 | .259 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 57 | June-Reg | Dallas McPherson | Anaheim Angels | IF | MLB | 1999-2012 | C | The Citadel | SF | SC | 386 | 21 | 2 | 18 | 45 | 5 | .241 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 58 | June-Reg | Matt Harrington ** | San Diego Padres | P | Ind | 2001-2007 | H | Palmdale (Palmdale,CA) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2001 | 2 | 59 | June-Reg | Brandon League | Toronto Blue Jays | P | MLB | 2001-2013 | H | St. Louis (Honolulu,HI) | SF | HI | -- | -- | -- | -- | -- | -- | -- | 19 | 28 | 3.60 | 60 | 415 | 309 | 0 |
| 2001 | 2 | 60 | June-Reg | Garrett Berger | Florida Marlins | P | RK | 2003-2008 | H | Carmel (Carmel,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 61 | June-Reg | Matt Chico ** | Boston Red Sox | P | MLB | 2002-2012 | H | Fallbrook (Fallbrook,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 62 | June-Reg | Shelley Duncan | New York Yankees | OF | MLB | 1999-2013 | C | University of Arizona | SF | AZ | 830 | 41 | 0 | 41 | 138 | 2 | .229 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 63 | June-Reg | Jason Arnold | New York Yankees | P | AAA | 1998-2006 | C | University of Central Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 64 | June-Reg | Justin Gillman | Cincinnati Reds | P | A | 2001-2004 | H | Mosley (Panama City,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 65 | June-Reg | Matt Coenen | Detroit Tigers | P | AA | 2001-2005 | C | Charleston Southern University | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 66 | June-Reg | Mike Gosling | Arizona Diamondbacks | P | MLB | 1999-2010 | C | Stanford University | SF | CA | 17 | 0 | 0 | 0 | 0 | 0 | .000 | 3 | 4 | 4.85 | 0 | 117 | 74 | 9 |
| 2001 | 2 | 67 | June-Reg | Mike Wilson | Seattle Mariners | OF | MLB | 2002-2012 | H | Booker T. Washington (Tulsa,OK) | SF | OK | 27 | 1 | 0 | 0 | 3 | 0 | .148 | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 68 | June-Reg | Brian Pilkington | Los Angeles Dodgers | P | AA | 2001-2005 | H | Santiago (Garden Grove,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 69 | June-Reg | Neal Cotts | Oakland Athletics | P | MLB | 2001-2013 | C | Illinois State University | SF | IL | 2 | 1 | 0 | 0 | 0 | 0 | .500 | 10 | 12 | 4.63 | 1 | 256 | 235 | 5 |
| 2001 | 2 | 70 | June-Reg | Alhaji Turay | New York Mets | OF | AA | 2001-2007 | H | Auburn (Auburn,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 71 | June-Reg | Ryan Wing | Chicago White Sox | P | AAA | 2001-2008 | C | Riverside Community College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 72 | June-Reg | Dan Haren | St. Louis Cardinals | P | MLB | 1999-2013 | C | Pepperdine University | SF | CA | 264 | 21 | 0 | 2 | 27 | 0 | .223 | 119 | 97 | 3.66 | 0 | 1877 | 1585 | 286 |
| 2001 | 2 | 73 | June-Reg | Cole Barthel | Atlanta Braves | 3B-OF | A | 2001-2004 | H | Decatur (Decatur,AL) | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 74 | June-Reg | Jesse Foppert | San Francisco Giants | P | MLB | 2000-2009 | C | University of San Francisco | SF | CA | 37 | 1 | 1 | 0 | 1 | 0 | .081 | 8 | 9 | 5.00 | 0 | 122 | 109 | 23 |
| 2001 | 2 | 75 | June-Reg | Trey Taylor ** | Colorado Rockies | P | RK | 2002-2005 | H | Mansfield (Mansfield,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2001 | 2 | 76 | June-Reg | Corey Ragsdale | New York Mets | SS | AAA | 2001-2009 | H | Nettleton (Jonesboro,AR) | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |