| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2000 | 1 | 1 | June-Reg | Adrian Gonzalez | Florida Marlins | 1B | MLB | 2000-2013 | H | Eastlake (Chula Vista,CA) | SF | CA | 4426 | 278 | 12 | 213 | 750 | 4 | .294 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 41 | June-Reg | Jason Stokes | Florida Marlins | IF | AAA | 2001-2010 | H | Coppell (Coppell,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 3 | 71 | June-Reg | Rob Henkel | Florida Marlins | P | AAA | 1997-2007 | C | UCLA | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 4 | 101 | June-Reg | Anthony Brewer | Florida Marlins | OF | A | 2000-2003 | H | Simeon Academy (Chicago,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 5 | 131 | June-Reg | Jim Kavourias | Florida Marlins | OF | AA | 1998-2005 | C | University of Tampa | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 6 | 161 | June-Reg | Will Smith | Florida Marlins | OF | AAA | 2000-2008 | H | Palo Verde (Tucson,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 7 | 191 | June-Reg | Brandon Sloan | Florida Marlins | P | AAA | 2000-2004 | C | Wichita State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 8 | 221 | June-Reg | Matt Massingale | Florida Marlins | P | AA | 2000-2002 | C | University of Washington | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 9 | 251 | June-Reg | Jesse Kozlowski ** | Florida Marlins | P | - | H | Westlake (Westlake Village,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 10 | 281 | June-Reg | Bill Clayton | Florida Marlins | P | NCAA | 2003-2005 | H | Glenwood (Chatham,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 11 | 311 | June-Reg | Steve Sawyer | Florida Marlins | P | A+ | 2000-2003 | C | Southeastern Louisiana University | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 12 | 341 | June-Reg | Pat Magness | Florida Marlins | OF | AA | 1997-2008 | C | Wichita State University | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 13 | 371 | June-Reg | Phil Akens | Florida Marlins | P | A+ | 2000-2005 | H | Fallston (Fallston,MD) | SF | MD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 14 | 401 | June-Reg | Robert Jones | Florida Marlins | P | A- | 1999-2000 | C | College of William and Mary | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 15 | 431 | June-Reg | Tim Schilling | Florida Marlins | P | A | 1998-2002 | C | Elon University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 16 | 461 | June-Reg | Scott Hicks | Florida Marlins | 1B | A+ | 2000-2003 | C | Lake Sumter Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 17 | 491 | June-Reg | Josh Willingham | Florida Marlins | 2B | MLB | 1998-2013 | C | University of North Alabama | SF | AL | 3226 | 186 | 14 | 167 | 544 | 32 | .261 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 18 | 521 | June-Reg | Chris Key | Florida Marlins | P | AAA | 2000-2007 | C | San Jose State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 19 | 551 | June-Reg | Brian Rogers | Florida Marlins | C | RK | 1999-2000 | C | College of William and Mary | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 20 | 581 | June-Reg | Adam Sterrett | Florida Marlins | P | RK | 2000-2002 | H | Robert E. Lee (Staunton,VA) | SF | VA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 21 | 611 | June-Reg | Matt Easterday | Florida Marlins | 2B | AAA | 2000-2003 | C | Georgia Southern University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 22 | 641 | June-Reg | David Gresky ** | Florida Marlins | OF | A- | 2001-2005 | H | St. Ignatius (Cleveland,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 23 | 671 | June-Reg | Daniel Moore ** | Florida Marlins | P | A | 2001-2004 | H | North Rowan (Spencer,NC) | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 24 | 701 | June-Reg | Ben Birk | Florida Marlins | P | RK | 1998-2002 | C | University of Minnesota | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 25 | 731 | June-Reg | Mike McNutt | Florida Marlins | P | AAA | 2000-2006 | C | College of Mount St. Joseph | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 26 | 761 | June-Reg | Nathan Staggs | Florida Marlins | P | A | 2001-2008 | H | San Diego (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 27 | 791 | June-Reg | Josh Muecke ** | Florida Marlins | AAA | 2001-2011 | H | Scripps Ranch (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 28 | 821 | June-Reg | Patrick Green | Florida Marlins | AA | 2003-2008 | H | Milton (Alpharetta,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 29 | 851 | June-Reg | Casey Hoorelbeke | Florida Marlins | P | AAA | 2004-2011 | C | North Idaho College | SF | ID | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 30 | 881 | June-Reg | Dustin Griffith | Florida Marlins | P | AAA | 2002-2006 | C | Seward County Community College | SF | KS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 31 | 911 | June-Reg | Jon Asahina | Florida Marlins | P | AAA | 2001-2008 | C | Freed-Hardeman University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 32 | 941 | June-Reg | Derek Mills | Florida Marlins | NCAA | 2002-2003 | C | Freed-Hardeman University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 33 | 971 | June-Reg | James Samolovitch | Florida Marlins | CF | NCAA | 2004-2005 | H | West Mifflin (West Mifflin,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 34 | 1001 | June-Reg | Joey Sexton | Florida Marlins | P | RK | 2001-2001 | H | Johnson (Savannah,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 35 | 1031 | June-Reg | Justin Sherman | Florida Marlins | P | A | 2002-2005 | C | Dixie State College of Utah | SF | UT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 36 | 1061 | June-Reg | Erik Dean ** | Florida Marlins | IF | A+ | 2002-2005 | H | Wilcox (Santa Clara,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 37 | 1091 | June-Reg | Josh Barton | Florida Marlins | P | - | H | Millington Central (Millington,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 38 | 1121 | June-Reg | Anthony Aceves | Florida Marlins | CF | - | C | CCBC Dundalk | SF | MD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 39 | 1151 | June-Reg | Nate Kopszywa ** | Florida Marlins | P | RK | 2003-2003 | H | D'Iberville (Biloxi,MS) | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 40 | 1181 | June-Reg | Christian Larsen | Florida Marlins | SS | - | H | San Mateo (San Mateo,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 41 | 1210 | June-Reg | Jared Brite ** | Florida Marlins | NCAA | 2001-2004 | H | Centennial (Bakersfield,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 42 | 1239 | June-Reg | Justin Knapp | Florida Marlins | SS | - | H | Arlington Country Day Sch (Jacksonville,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 43 | 1268 | June-Reg | Steve Ramsey | Florida Marlins | NCAA | 2001-2003 | H | Eastlake (Sammamish,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 2000 | 44 | 1296 | June-Reg | Levi Webber ** | Florida Marlins | OF | A- | 2001-2004 | H | Glide (Glide,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 45 | 1322 | June-Reg | Jeffrey Stevens | Florida Marlins | OF | A- | 2000-2000 | C | University of California-Riverside | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |