| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 2000 | 2 | 41 | June-Reg | Jason Stokes | Florida Marlins | IF | AAA | 2001-2010 | H | Coppell (Coppell,TX) | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 42 | June-Reg | Tagg Bozied ** | Minnesota Twins | 1B | AAA | 2000-2011 | C | University of San Francisco | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 43 | June-Reg | Bobby Hill | Chicago Cubs | 2B | MLB | 1997-2011 | C | University of Miami | SF | FL | 523 | 20 | 4 | 6 | 58 | 6 | .262 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 44 | June-Reg | Mike Tonis | Kansas City Royals | C | MLB | 1998-2004 | C | University of California | SF | CA | 6 | 0 | 0 | 0 | 0 | 0 | .000 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 45 | June-Reg | Peter Bauer | Toronto Blue Jays | P | AAA | 1998-2006 | C | University of South Carolina | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 46 | June-Reg | Dane Sardinha | Cincinnati Reds | C | MLB | 1998-2011 | C | Pepperdine University | SF | CA | 151 | 4 | 1 | 3 | 15 | 0 | .166 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 47 | June-Reg | Jason Young | Colorado Rockies | P | MLB | 1998-2005 | C | Stanford University | SF | CA | 9 | 1 | 0 | 0 | 1 | 0 | .222 | 0 | 3 | 9.71 | 0 | 30 | 25 | 5 |
| 2000 | 2 | 48 | June-Reg | Chad Petty | Detroit Tigers | P | A+ | 2000-2005 | H | Chalker (Southington,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 49 | June-Reg | Xavier Nady | San Diego Padres | OF | MLB | 1998-2013 | C | University of California | SF | CA | 2932 | 158 | 7 | 101 | 406 | 19 | .270 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 50 | June-Reg | Jared Abruzzo | Anaheim Angels | C | AA | 2000-2005 | H | El Capitan (Lakeside,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 51 | June-Reg | Bubba Nelson | Atlanta Braves | P | AAA | 2000-2009 | H | Riverdale Baptist (Upper Marlboro,MD) | SF | MD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 52 | June-Reg | Tim Hummel | Chicago White Sox | 2B | MLB | 2000-2006 | C | Old Dominion University | SF | VA | 194 | 9 | 0 | 3 | 17 | 1 | .222 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 53 | June-Reg | Chris Narveson | St. Louis Cardinals | P | MLB | 2000-2013 | H | Roberson (Asheville,NC) | SF | NC | 110 | 3 | 0 | 0 | 12 | 0 | .227 | 26 | 18 | 4.67 | 0 | 395 | 326 | 63 |
| 2000 | 2 | 54 | June-Reg | J.D. Durbin | Minnesota Twins | P | MLB | 2000-2012 | H | Coronado (Scottsdale,AZ) | SF | AZ | 19 | 1 | 0 | 0 | 0 | 0 | .263 | 6 | 6 | 6.19 | 1 | 73 | 46 | 11 |
| 2000 | 2 | 55 | June-Reg | Brian Tallet | Cleveland Indians | P | MLB | 1997-2012 | C | Louisiana State University | SF | LA | 5 | 0 | 0 | 0 | 0 | 0 | .000 | 16 | 25 | 4.79 | 0 | 460 | 337 | 36 |
| 2000 | 2 | 56 | June-Reg | Jason Bourgeois | Texas Rangers | IF | MLB | 2000-2013 | H | Forest Brook (Houston,TX) | SF | TX | 463 | 15 | 4 | 2 | 27 | 51 | .261 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 57 | June-Reg | Joel Hanrahan | Los Angeles Dodgers | P | MLB | 2000-2013 | H | Norwalk Community (Norwalk,IA) | SF | IA | 17 | 2 | 1 | 0 | 3 | 0 | .235 | 22 | 17 | 3.74 | 96 | 397 | 436 | 11 |
| 2000 | 2 | 58 | June-Reg | Dominic Rich | Toronto Blue Jays | IF | AA | 1998-2005 | C | Auburn University | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 59 | June-Reg | David Beigh | Pittsburgh Pirates | P | A | 2000-2007 | H | Harrison (West Lafayette,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 60 | June-Reg | Freddie Bynum | Oakland Athletics | IF | MLB | 2000-2012 | C | Pitt Community College | SF | NC | 351 | 17 | 8 | 6 | 32 | 18 | .234 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 61 | June-Reg | Lance Niekro | San Francisco Giants | IF | MLB | 1999-2009 | C | Florida Southern College | SF | FL | 499 | 26 | 5 | 17 | 79 | 0 | .246 | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 62 | June-Reg | Manny Delcarmen | Boston Red Sox | P | MLB | 2001-2013 | H | West Roxbury (West Roxbury,MA) | SF | MA | 1 | 0 | 0 | 0 | 0 | 0 | .000 | 11 | 8 | 3.97 | 3 | 293 | 249 | 0 |
| 2000 | 2 | 63 | June-Reg | Ryan Snare | Cincinnati Reds | P | MLB | 1998-2006 | C | University of North Carolina | SF | NC | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 10.80 | 0 | 3 | 0 | 0 |
| 2000 | 2 | 64 | June-Reg | Randy Truselo | Texas Rangers | P | A | 2000-2003 | H | Delcastle (Wilmington,DE) | SF | DE | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 65 | June-Reg | Matt Peterson | New York Mets | P | AAA | 2001-2010 | H | Rapides School (Lecompte,LA) | SF | LA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 66 | June-Reg | Mark Folsom | Cleveland Indians | RF | A | 2000-2002 | H | Winter Garden (Winter Garden,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 67 | June-Reg | Chad Qualls | Houston Astros | P | MLB | 2001-2013 | C | University of Nevada | SF | NV | 6 | 0 | 0 | 0 | 0 | 0 | .000 | 40 | 35 | 3.92 | 51 | 595 | 453 | 0 |
| 2000 | 2 | 68 | June-Reg | Danny Borrell | New York Yankees | P | AAA | 1998-2008 | C | Wake Forest University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 2000 | 2 | 69 | June-Reg | Mike Schultz | Arizona Diamondbacks | P | MLB | 1998-2012 | C | Loyola Marymount University | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 0.00 | 0 | 1 | 1 | 0 |
| 2000 | 2 | 70 | June-Reg | Bryan Digby | Atlanta Braves | P | AA | 2000-2006 | H | McIntosh (Peachtree City,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |