| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 33 | 985 | June-Reg | Cortney Hill | Tampa Bay Rays | - | C | Eastern Oklahoma State College | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | ||
| 1999 | 33 | 986 | June-Reg | Mike Flannery | Florida Marlins | P | AAA | 2000-2009 | C | Gloucester County College | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 987 | June-Reg | Jason Frasor | Detroit Tigers | P | MLB | 1999-2013 | C | Southern Illinois University | SF | IL | -- | -- | -- | -- | -- | -- | -- | 26 | 31 | 3.77 | 36 | 522 | 499 | 0 |
| 1999 | 33 | 988 | June-Reg | Joseph Yakopich | Arizona Diamondbacks | SS | A+ | 1999-2001 | H | St. Thomas of Villanova (LaSalle,ON) | SF | ON | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 989 | June-Reg | Billy Keppinger ** | Minnesota Twins | LF | AA | 2000-2007 | C | Lake City Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 990 | June-Reg | Victor Rosario ** | Montreal Expos | OF | A | 2001-2003 | H | Sandalwood (Jacksonville,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 991 | June-Reg | Mike Clay | Kansas City Royals | SS-C | A | 1999-2000 | C | Southeastern Oklahoma State University | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 992 | June-Reg | Mike Sabens | Pittsburgh Pirates | P | A | 1999-2001 | C | Berry College | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 993 | June-Reg | Alex Coleman | Oakland Athletics | NCAA | 2000-2003 | H | Lake Highlands (Dallas,TX) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 33 | 994 | June-Reg | Chris Schilling | Milwaukee Brewers | C | RK | 1999-2000 | H | D W Daniel (Central,SC) | SF | SC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 995 | June-Reg | Chuck Lopez | Seattle Mariners | CF | AA | 2000-2003 | C | Long Beach State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 996 | June-Reg | Dean Muthig | Philadelphia Phillies | 3B | A- | 1999-2000 | C | Carthage College | SF | WI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 997 | June-Reg | James Phillips | Baltimore Orioles | P | RK | 1999-2001 | H | Maysville (Zanesville,OH) | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 998 | June-Reg | Jason Howard | Cincinnati Reds | C | A | 1999-1999 | C | East Carolina University | SF | NC | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 999 | June-Reg | Tony Neal ** | Chicago White Sox | P | A+ | 2001-2006 | C | Faulkner State Community College | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1000 | June-Reg | Darren Clarke ** | Colorado Rockies | P | MLB | 2000-2008 | H | Plant (Tampa,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1001 | June-Reg | Timothy Boeth | Anaheim Angels | 3B-SS | A- | 1999-1999 | C | University of Central Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1002 | June-Reg | Bo Hart | St. Louis Cardinals | 2B | MLB | 1998-2008 | C | Gonzaga University | SF | WA | 309 | 13 | 5 | 4 | 30 | 3 | .272 | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1003 | June-Reg | Collin Perschon ** | Toronto Blue Jays | P | - | C | Bellevue Community College | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 33 | 1004 | June-Reg | Cliff Wren | Los Angeles Dodgers | C | A+ | 1999-2003 | C | Mississippi State University | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1005 | June-Reg | Tony Piazza ** | Texas Rangers | C | AAA | 2002-2006 | H | Fairview (Boulder,CO) | SF | WY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1006 | June-Reg | Lionel Rogers | New York Mets | P | A- | 1999-2000 | C | Freed-Hardeman University | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1007 | June-Reg | Scott Thomas ** | Cleveland Indians | C | AAA | 2006-2012 | H | chaminade College Prep Sc (St. Louis,MO) | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1008 | June-Reg | Kavonski Chatman | San Francisco Giants | P-CF | - | C | Northeast Texas Community College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 33 | 1009 | June-Reg | Perry Miley | Boston Red Sox | CF | A- | 1999-2000 | C | William Carey University | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1010 | June-Reg | Greg Hanoian | Chicago Cubs | CF | NCAA | 1996-1999 | C | USC | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1011 | June-Reg | Santiago Narciandi | New York Yankees | C | - | C | Miami-Dade College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 33 | 1012 | June-Reg | Shawn Hill ** | San Diego Padres | P | MLB | 2000-2013 | H | Bishop P.F. Reding Cathol (Georgetown,ON) | SF | ON | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1013 | June-Reg | Steven Hoover | Houston Astros | OF | A- | 1999-1999 | C | Cal State Stanislaus | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 33 | 1014 | June-Reg | Thomas Parrott | Atlanta Braves | 3B | A- | 2000-2001 | H | Merritt Island (Merritt Island,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |