| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 32 | 955 | June-Reg | Josh Nichols | Tampa Bay Rays | NCAA | 2000-2000 | H | Bradford (Starke,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 956 | June-Reg | Dustin Griffith ** | Florida Marlins | P | AAA | 2002-2006 | H | Dakota Ridge (Littleton,CO) | SF | CO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 957 | June-Reg | Eric Eckenstahler | Detroit Tigers | P | MLB | 2000-2005 | C | Illinois State University | SF | IL | -- | -- | -- | -- | -- | -- | -- | 1 | 0 | 3.80 | 0 | 24 | 25 | 0 |
| 1999 | 32 | 958 | June-Reg | Jim Kavourias ** | Arizona Diamondbacks | OF | AA | 1998-2005 | C | Pensacola State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 959 | June-Reg | Jeff Balser ** | Minnesota Twins | P | A+ | 2001-2002 | H | Venice (Venice,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 960 | June-Reg | Jason Stevenson ** | Montreal Expos | P | AAA | 2001-2012 | H | Foothill (Palo Cedro,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 961 | June-Reg | Jason Arre | Kansas City Royals | - | H | Toms River East (Toms River,NJ) | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | ||
| 1999 | 32 | 962 | June-Reg | Jason Biddlestone | Pittsburgh Pirates | P | A- | 1999-2003 | C | Columbus State Community College | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 963 | June-Reg | Micah Dunphy | Oakland Athletics | P | RK | 1999-2000 | C | Sauk Valley Community College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 964 | June-Reg | Justin Gordon | Milwaukee Brewers | P | A+ | 1999-2004 | C | Massasoit Community College | SF | MA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 965 | June-Reg | Andrew Wells ** | Seattle Mariners | NCAA | 2003-2008 | H | St. Stephen's-St. Agnes (Alexandria,VA) | SF | OK | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 966 | June-Reg | Jay Sitzman | Philadelphia Phillies | OF | AA | 1998-2005 | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 967 | June-Reg | Kevin Virtue | Baltimore Orioles | Ind | 2002-2003 | H | A.B. Lucas (London,ON) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | ||
| 1999 | 32 | 968 | June-Reg | Jack Arroyo ** | Cincinnati Reds | 2B | AAA | 2004-2006 | H | East Union (Manteca,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 969 | June-Reg | Michel Valdez | Chicago White Sox | OF | - | C | Miami-Dade College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 970 | June-Reg | Casey Kelly | Colorado Rockies | 1B | - | H | Westview (Portland,OR) | SF | OR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 971 | June-Reg | Chris Hills | Anaheim Angels | CF | A | 1999-2001 | C | Jackson State University | SF | MS | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 971 | June-Reg | Nick Green | Atlanta Braves | 2B | MLB | 1999-2013 | C | Georgia Perimeter College | SF | GA | 1023 | 56 | 5 | 16 | 97 | 6 | .236 | 0 | 0 | 0.00 | 0 | 2 | 0 | 0 |
| 1999 | 32 | 972 | June-Reg | Trevor Sansom | St. Louis Cardinals | P | AA | 1999-2004 | C | West Virginia State University | SF | WV | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 973 | June-Reg | Aaron Fera | Toronto Blue Jays | DH | A+ | 1996-2004 | C | Georgia College & State University | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 974 | June-Reg | Nolan McManus | Los Angeles Dodgers | P | - | C | Sierra College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 975 | June-Reg | Josue Lopez | Texas Rangers | 1B | Ind | 2005-2007 | H | El Toro (El Toro,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 976 | June-Reg | Brian Williamson | New York Mets | P | A- | 1999-1999 | C | Cornell University | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 977 | June-Reg | Benjamin Fransico | Cleveland Indians | CF | - | H | Servite (Anaheim,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 978 | June-Reg | Tim Gilhooly ** | San Francisco Giants | OF | A- | 2002-2003 | H | San Ramon Valley (Danville,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 979 | June-Reg | David Flournoy | Boston Red Sox | LF-RF | - | H | Deer Valley (Antioch,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 32 | 980 | June-Reg | Jorge Acevedo | Chicago Cubs | CF | - | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | ||
| 1999 | 32 | 981 | June-Reg | Ryan Fry ** | New York Yankees | 3B | A | 1998-2004 | H | Nazareth Area (Stockertown,PA) | SF | PA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 982 | June-Reg | Jeremy Webster | San Diego Padres | P | A+ | 1999-2002 | C | Salt Lake Community College | SF | UT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 983 | June-Reg | Billy Zbacnik | Houston Astros | 1B | RK | 2003-2005 | H | University of San Diego (San Diego,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 32 | 984 | June-Reg | Joseph Francisco | Atlanta Braves | CF | A- | 1999-2000 | C | Wagner College | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |