| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1999 | 45 | 1334 | June-Reg | Chad Coder | Tampa Bay Rays | NCAA | 2001-2003 | H | Eastlake (Sammamish,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1335 | June-Reg | John Anderson ** | Florida Marlins | NCAA | 2003-2003 | H | Pine Bluff (Pine Bluff,AR) | SF | AR | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1336 | June-Reg | Jered Liebeck | Arizona Diamondbacks | A+ | 2000-2005 | H | Mountain Ridge (Glendale,AZ) | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1337 | June-Reg | Pat Neshek ** | Minnesota Twins | P | MLB | 2000-2013 | H | Park Center (Brooklyn Park,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1338 | June-Reg | Christopher Richard | Montreal Expos | LF | - | C | Norwalk Community College | SF | CT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1339 | June-Reg | Jacob Baker | Kansas City Royals | A | 1998-2000 | C | Rice University | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1340 | June-Reg | Raul Nieves ** | Pittsburgh Pirates | IF | AAA | 2000-2005 | H | -- | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1341 | June-Reg | William Zeier | Oakland Athletics | RF | - | C | Laney College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1342 | June-Reg | Jason France | Milwaukee Brewers | P | - | C | Central Arizona College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1343 | June-Reg | Jon Nelson ** | Seattle Mariners | 1B | AAA | 2002-2011 | C | Dixie State College of Utah | SF | UT | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1344 | June-Reg | Brad Guglielmelli ** | Baltimore Orioles | C | A- | 2001-2005 | C | Cuesta College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1345 | June-Reg | Paul Brown | Cincinnati Reds | P | A | 1999-2000 | C | Citrus College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1346 | June-Reg | James Hymon ** | Chicago White Sox | SS | RK | 2003-2004 | C | Kishwaukee College | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1347 | June-Reg | Nick McCurdy ** | Colorado Rockies | P | AAA | 2001-2010 | C | Jefferson Davis Community College | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1348 | June-Reg | Bill Curtis | Anaheim Angels | RF | A | 1999-2000 | C | Grand Canyon University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1349 | June-Reg | Brendon Stafford | Toronto Blue Jays | P | - | H | St. Mathews (Gloucester,ON) | SF | ON | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1350 | June-Reg | Erik Lohse ** | Los Angeles Dodgers | P | AA | 2001-2005 | C | Butte College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1351 | June-Reg | Brad Hertel | Texas Rangers | Ind | 2002-2003 | H | Clovis West (Fresno,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1352 | June-Reg | Ross Peeples | New York Mets | P | A+ | 2000-2012 | C | Middle Georgia College | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1353 | June-Reg | Doug Johnson ** | Cleveland Indians | P | A+ | 2002-2006 | H | Pelham (Pelham,NH) | SF | NH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1354 | June-Reg | Chad Ashlock ** | San Francisco Giants | P | A- | 2000-2001 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1355 | June-Reg | Brady Williams | Boston Red Sox | IF | AA | 1999-2005 | C | Pasco-Hernando Community College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1999 | 45 | 1356 | June-Reg | Michael Sims | Chicago Cubs | CF | - | H | Karns (Knoxville,TN) | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1357 | June-Reg | Ruben Mancilla | New York Yankees | 3B | - | H | Costa Mesa (Costa Mesa,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1999 | 45 | 1358 | June-Reg | Grant Abrams | Atlanta Braves | SS | A- | 2000-2002 | C | St. Petersburg College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |