| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1988 | 4 | 84 | June-Reg | William Thompson | San Diego Padres | P | A | 1988-1990 | H | Mount Dora Bible (Orlando,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 85 | June-Reg | Daren Epley | Cleveland Indians | 1B | AAA | 1988-1993 | C | Bradley University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 86 | June-Reg | Kevin Tyson | Atlanta Braves | C | RK | 1988-1989 | H | Jefferson (Lafayette,IN) | SF | IN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 87 | June-Reg | Aman Hicks | Baltimore Orioles | OF | A | 1988-1991 | H | Gardena (Gardena,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 88 | June-Reg | Anthony Collier | Los Angeles Dodgers | OF | AA | 1988-1993 | H | Muir (Pasadena,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 89 | June-Reg | Everett Cunningham | Texas Rangers | P | AA | 1988-1991 | C | Northwestern University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 90 | June-Reg | Luis Gonzalez | Houston Astros | 1B | MLB | 1988-2008 | C | University of South Alabama | SF | AL | 9157 | 596 | 68 | 354 | 1439 | 128 | .283 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 91 | June-Reg | J.R. Phillips | California Angels | P-OF | MLB | 1988-2005 | H | Bishop Amat (La Puente,CA) | SF | 501 | 19 | 1 | 23 | 67 | 2 | .188 | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 4 | 92 | June-Reg | Brad Huff | Chicago Cubs | C | A+ | 1988-1991 | H | Monroe Area (Monroe,GA) | SF | GA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 93 | June-Reg | Johnny Ruffin | Chicago White Sox | P | MLB | 1988-2004 | H | Choctaw County (Butler,AL) | SF | AL | 17 | 0 | 0 | 0 | 0 | 1 | .176 | 10 | 6 | 4.13 | 3 | 196 | 163 | 0 |
| 1988 | 4 | 94 | June-Reg | Joe Ciccarella ** | Philadelphia Phillies | 1B | AAA | 1991-1996 | H | Mater Dei (Santa Ana,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 96 | June-Reg | Steve Buckholz | Pittsburgh Pirates | P | AA | 1988-1992 | C | Fresno State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 97 | June-Reg | Lee Hancock | Seattle Mariners | P | MLB | 1988-1997 | C | Cal Poly | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 4.45 | 0 | 32 | 19 | 0 |
| 1988 | 4 | 98 | June-Reg | Guy Gianni | Cincinnati Reds | C | RK | 1988-1990 | H | Gordon Tech (Chicago,IL) | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 99 | June-Reg | Enoch Simmons | Oakland Athletics | OF | AAA | 1988-1994 | C | Loyola Marymount University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 100 | June-Reg | Carl Hanselman | San Francisco Giants | P | AAA | 1988-1995 | H | Merritt Island (Merritt Island,FL) | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 101 | June-Reg | Greg Harvey | Kansas City Royals | P | AA | 1988-1992 | C | Seminole State College of Florida | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 102 | June-Reg | Scott Davison | Montreal Expos | P-SS | MLB | 1988-2001 | H | Redondo Union (Redondo Beach,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | 0 | 0 | 8.10 | 0 | 13 | 12 | 0 |
| 1988 | 4 | 103 | June-Reg | Steve Dunn | Minnesota Twins | 1B | MLB | 1988-1996 | H | Robinson (Fairfax,VA) | SF | VA | 41 | 5 | 0 | 0 | 4 | 0 | .195 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 104 | June-Reg | Dan Furmanik | New York Mets | P | A+ | 1988-1991 | C | Palm Beach State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 105 | June-Reg | Todd Malone | New York Yankees | P | A+ | 1988-1993 | H | Casa Roble (Orangevale,CA) | SF | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 4 | 106 | June-Reg | Mike Ross | St. Louis Cardinals | 2B | AAA | 1988-1992 | C | Cal State Fullerton | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 107 | June-Reg | Ken Kremer | Milwaukee Brewers | 1B | A | 1988-1989 | C | Rider University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 108 | June-Reg | Eric Brooks | Toronto Blue Jays | C | AAA | 1988-1998 | H | La Mirada (La Mirada,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 4 | 109 | June-Reg | Lance Shebelut | Detroit Tigers | 1B | A | 1988-1988 | C | Fresno State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |