| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1988 | 21 | 526 | June-Reg | Pedro Lopez | San Diego Padres | C | AAA | 1988-2000 | C | Arizona Western College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 527 | June-Reg | Jason Geis | Cleveland Indians | OF | A- | 1992-1992 | H | Hudson's Bay (Vancouver,WA) | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 528 | June-Reg | Steve Lopez | Atlanta Braves | 3B-OF | A | 1988-1989 | H | Vacaville (Vacaville,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 529 | June-Reg | Rene Francisco ** | Baltimore Orioles | OF | A | 1989-1990 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 530 | June-Reg | Steve Finken | Los Angeles Dodgers | SS | AAA | 1988-1992 | C | University of Michigan | SF | MI | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 531 | June-Reg | Mark Bowlan ** | Texas Rangers | p | A | 1989-1991 | C | University of Memphis | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 532 | June-Reg | Rick Dunnum | Houston Astros | p | AA | 1988-1991 | C | William Penn University | SF | IA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 533 | June-Reg | Paul Borse | California Angels | OF | RK | 1989-1989 | C | Sacramento City College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 534 | June-Reg | Kraig Washington | Chicago Cubs | OF | A | 1988-1990 | C | Santiago Canyon College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 535 | June-Reg | Scott Tedder | Chicago White Sox | OF | AAA | 1988-1995 | C | Ohio Wesleyan University | SF | OH | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 536 | June-Reg | David Boss ** | Philadelphia Phillies | p | A- | 1989-1990 | C | University of California-Santa Barbara | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 537 | June-Reg | Gary Kinser | Boston Red Sox | p | - | C | Columbia State Community College | SF | TN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 21 | 538 | June-Reg | Val Henderson | Pittsburgh Pirates | OF | A- | 1988-1989 | C | Bellevue Community College | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 539 | June-Reg | Michael McLaughlin | Seattle Mariners | SS | A- | 1988-1988 | C | Rowan University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 540 | June-Reg | Brian Nichols | Cincinnati Reds | C | A | 1988-1990 | C | USC | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 541 | June-Reg | Tony Floyd | Oakland Athletics | p | A- | 1988-1990 | C | Missouri State University | SF | MO | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 542 | June-Reg | Steve Decker | San Francisco Giants | C | MLB | 1988-2000 | C | Lewis-Clark State College | SF | ID | 688 | 21 | 2 | 13 | 72 | 2 | .221 | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 543 | June-Reg | Milt Richardson | Kansas City Royals | OF | A- | 1988-1989 | C | Skyline College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 544 | June-Reg | Eric Nelson | Montreal Expos | 3B-p | RK | 1988-1988 | C | San Jose State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 545 | June-Reg | Jeff Milene | Minnesota Twins | OF | A+ | 1988-1990 | H | Mayo (Rochester,MN) | SF | MN | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 546 | June-Reg | Paul Johnson | New York Mets | p | A+ | 1988-1990 | C | Rutgers University | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 547 | June-Reg | Bruce Prybylinski | New York Yankees | p | AA | 1988-1993 | C | Illinois State University | SF | IL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 548 | June-Reg | Freddie Langiotti | St. Louis Cardinals | C | A+ | 1988-1991 | C | University of Tampa | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 549 | June-Reg | Brian Dodd ** | Milwaukee Brewers | p | - | C | Arizona State University | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1988 | 21 | 550 | June-Reg | Rick Holifield | Toronto Blue Jays | OF | AAA | 1988-1999 | H | Ganesha (Pomona,CA) | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1988 | 21 | 551 | June-Reg | Bob Thomas | Detroit Tigers | p | A | 1988-1989 | C | Sonoma State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |