| Year | Rnd | Ovl | Phase | Player | Drafting Team | Pos | HiLvl | Played | Src | Drafted From | SF | State | AB | 2B | 3B | HR | RBI | SB | BAVG | W | L | ERA | SV | IP | SO | GS |
| 1986 | 1 | 1 | June-Sec | Alex Jimenez ** | New York Mets | 1B | AAA | 1986-1991 | C | Miami-Dade College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 2 | June-Sec | Pat Garman | Texas Rangers | 3B | AAA | 1987-1991 | C | Cal State Fullerton | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 3 | June-Sec | Pete Roberts | San Diego Padres | P | AAA | 1986-1991 | C | University of Alabama | SF | AL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 4 | June-Sec | Greg Vaughn | Milwaukee Brewers | OF | MLB | 1986-2003 | C | University of Miami | SF | FL | 6103 | 284 | 23 | 355 | 1072 | 121 | .242 | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 5 | June-Sec | Lou Frazier ** | Houston Astros | OF | MLB | 1986-1999 | C | Scottsdale Community College | SF | AZ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 6 | June-Sec | Jim Bruske | Cleveland Indians | OF | MLB | 1986-2001 | C | Loyola Marymount University | SF | CA | 10 | 1 | 0 | 0 | 0 | 0 | .100 | 9 | 1 | 4.12 | 2 | 144 | 95 | 1 |
| 1986 | 1 | 7 | June-Sec | Greg Lonigro ** | Cincinnati Reds | IF | AAA | 1986-1993 | C | Florida State College at Jacksonville | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 8 | June-Sec | Alan Mills ** | California Angels | P | MLB | 1986-2007 | C | Polk State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 9 | June-Sec | Carl Jones-Pointer ** | Atlanta Braves | OF | A | 1986-1988 | C | Mount San Antonio College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 10 | June-Sec | Tim Herrmann ** | Kansas City Royals | P | A | 1989-1990 | C | Blinn College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 11 | June-Sec | Carlos Carrasco ** | Los Angeles Dodgers | P | A+ | 1987-1992 | C | Gavilan College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 12 | June-Sec | Greg Briley | Seattle Mariners | 2B | MLB | 1986-1997 | C | North Carolina State University | SF | NC | 1518 | 75 | 9 | 29 | 135 | 65 | .253 | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 13 | June-Sec | Tony Faryniarz | Chicago Cubs | P | A- | 1986-1986 | C | San Diego State University | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 14 | June-Sec | Mike Jones ** | Detroit Tigers | P | AA | 1988-1990 | C | Cosumnes River College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 15 | June-Sec | Jeff Oswalt ** | Montreal Expos | P | RK | 1989-1989 | C | San Diego Mesa College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 16 | June-Sec | John Briscoe ** | Toronto Blue Jays | P | MLB | 1988-2002 | C | Texarkana College | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 17 | June-Sec | Derek Lee ** | Philadelphia Phillies | IF | MLB | 1988-2000 | C | State College of Florida, Manatee-Sarasota | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 18 | June-Sec | Jay Makemson ** | New York Yankees | P | A+ | 1987-1989 | C | Orange County Community College | SF | NY | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 19 | June-Sec | Rick Christian ** | St. Louis Cardinals | OF | AAA | 1986-1992 | C | Hagerstown Community College | SF | MD | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 20 | June-Sec | Ed Banasiak ** | Boston Red Sox | P | A- | 1987-1987 | C | County College of Morris | SF | NJ | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 21 | June-Sec | Harry Michael ** | Pittsburgh Pirates | OF | A+ | 1987-1990 | C | Big Bend Community College | SF | WA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 22 | June-Sec | Bret Barberie ** | Oakland Athletics | IF | MLB | 1989-1998 | C | Cerritos College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 23 | June-Sec | Jay Searcy ** | San Francisco Giants | 3B | NCAA | 1982-1984 | C | University of Texas | SF | TX | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 24 | June-Sec | Dan Rohrmeier ** | Chicago White Sox | IF | MLB | 1987-2002 | C | Miami-Dade College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 1986 | 1 | 25 | June-Sec | James McClellan ** | Minnesota Twins | P | - | C | Ohlone College | SF | CA | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | |
| 1986 | 1 | 26 | June-Sec | Paris Hayden ** | Baltimore Orioles | OF | AA | 1987-1991 | C | Indian River State College | SF | FL | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |