| 1 | 3 | June-Reg | Josh Vitters | 3B | 17 | 6-3 | 200 | R | R | A+ | | Cypress (Cypress,CA) | $3,200,000 |
| 1 | 48 | June-Reg | Josh Donaldson | C | 21 | 5-11 | 182 | R | R | AA | | Auburn University | $652,500 |
| 3 | 97 | June-Reg | Tony Thomas | 2B | 20 | 5-10 | 185 | R | R | AA | | Florida State University | $360,000 |
| 4 | 127 | June-Reg | Darwin Barney | SS | 21 | 5-10 | 175 | R | R | AAA | | Oregon State University | $222,750 |
| 5 | 157 | June-Reg | Brandon Guyer | OF | 21 | 6-1 | 210 | R | R | AA | | University of Virginia | $148,000 |
| 6 | 187 | June-Reg | Casey Lambert | P | 21 | 5-11 | 175 | L | L | AAA | | University of Virginia | $53,000 |
| 7 | 217 | June-Reg | Ty Wright | OF | 22 | 6-0 | 195 | R | R | AA | | Oklahoma State University | $42,000 |
| 9 | 277 | June-Reg | Clark Hardman | OF | 21 | 6-2 | 200 | L | R | A | | Cal State Fullerton | $114,500 |
| 10 | 307 | June-Reg | Leon Johnson | OF | 22 | 6-1 | 185 | L | L | A | | Brigham Young University | $109,500 |
| 11 | 337 | June-Reg | Chris Siegfried | P | 21 | 6-5 | 195 | L | L | A+ | | University of Portland | |
| 12 | 367 | June-Reg | Ryan Acosta | P/SS | 18 | 6-2 | 170 | R | R | A | | Central Catholic (Clearwater,FL) | |
| 13 | 397 | June-Reg | Jonathan Wyatt | OF | 22 | 5-10 | 185 | L | R | A+ | | University of Georgia | |
| 14 | 427 | June-Reg | James Russell | P | 21 | 6-4 | 205 | L | L | AAA | | University of Texas | |
| 15 | 457 | June-Reg | Marc Sawyer | 1B | 21 | 6-3 | 210 | L | L | A- | | Yale University | |
| 16 | 487 | June-Reg | Zach Ashwood | P | 21 | 6-4 | 202 | B | L | A | | University of Kansas | |
| 17 | 517 | June-Reg | Arik Hempy | P | 22 | 6-4 | 245 | R | L | A | | University of South Carolina | |
| 18 | 547 | June-Reg | Jeffrey Rea | 2B | 22 | 5-8 | 155 | L | R | A+ | | Mississippi State University | |
| 19 | 577 | June-Reg | Kyle Day | C | 20 | 5-11 | 200 | L | R | A+ | | Michigan State University | |
| 20 | 607 | June-Reg | Jose Made | SS | 21 | 5-8 | 172 | R | R | AA | | Dominican College | |
| 21 | 637 | June-Reg | Dustin Sasser | P | 21 | 6-0 | 200 | L | L | AA | | East Carolina University | |
| 22 | 667 | June-Reg | Craig Muschko | P | 21 | 6-2 | 190 | R | R | A+ | | La Salle University | |
| 23 | 697 | June-Reg | Steve Vento | P | 21 | 6-3 | 210 | R | R | A+ | | Palm Beach Community College | |
| 24 | 727 | June-Reg | Scott Meyer | P | 21 | 6-3 | 220 | R | R | A+ | | Lamar University | |
| 25 | 757 | June-Reg | Victor Sanchez | 3B/C | 18 | 6-2 | 180 | R | R | Rookie | | Gahr (Cerritos,CA) | |
| 26 | 787 | June-Reg | Michael Bunton | P | 20 | 6-4 | 210 | L | L | A- | | College of Charleston | |
| 27 | 817 | June-Reg | Clayton Suss | P | 18 | 6-2 | 190 | R | R | A- | | Cooper City (Cooper City,FL) | |
| 28 | 847 | June-Reg | Bill Moss | 2B | 23 | 6-0 | 194 | R | R | A- | | University of Memphis | |
| 29 | 877** | June-Reg | Andrew Cashner | P | 20 | 6-5 | 185 | R | R | AA | | Angelina College | $0 |
| 30 | 907 | June-Reg | Luke Sommer | OF | 22 | 6-3 | 190 | L | L | A+ | | University of San Francisco | |
| 31 | 937 | June-Reg | Brian LeClerc | OF | 22 | 5-10 | 175 | L | R | A | | University of Florida | |
| 32 | 966 | June-Reg | Luis Bautista | C | 22 | 6-4 | 240 | R | R | A | | Florida International University | |
| 33 | 995** | June-Reg | Preston Clark | C | 21 | 5-11 | 210 | R | R | College | | University of Texas | |
| 34 | 1024 | June-Reg | Enrique Garcia | P | 20 | 6-4 | 225 | R | R | Rookie | | University of Miami | |
| 35 | 1053 | June-Reg | J.C. Casey | P | 18 | 6-3 | 174 | R | R | College | | Kickapoo (Springfield,MO) | |
| 36 | 1082 | June-Reg | Billy Mottran | 3B | 22 | 6-0 | 195 | L | R | - | | Dowling College | |
| 37 | 1110 | June-Reg | Mike McGee | 3B | 18 | 6-0 | 185 | R | R | College | | Port St. Lucie (Port St. Lucie,FL) | |
| 38 | 1138 | June-Reg | Yuri Higgins | P | 22 | 5-8 | 182 | R | R | A- | | University of South Florida | |
| 39 | 1166 | June-Reg | Roberto Sabates | C | 22 | 6-4 | 205 | R | R | Ind | | | |
| 40 | 1194 | June-Reg | Corey Bachman | P | 22 | 6-0 | 185 | R | R | Ind | | Virginia Military Institute | |
| 41 | 1220 | June-Reg | Jordan Herr | OF | 21 | 6-1 | 190 | R | R | Ind | | University of Pittsburgh | |
| 42 | 1246 | June-Reg | Colt Sedbrook | IF | 21 | 5-11 | 180 | R | R | AA | | University of Arizona | |
| 43 | 1272 | June-Reg | Garrett Clyde | P | 20 | 6-3 | 200 | R | R | College | | San Jacinto College | |
| 44 | 1298 | June-Reg | Bryan Jost | 1B | 21 | 6-4 | 205 | L | L | Rookie | | University of Minnesota | |
| 45 | 1324 | June-Reg | Ryan Lewis | OF | 20 | 6-4 | 200 | R | R | - | | Yakima Valley Community College | |
| 46 | 1348** | June-Reg | Tyler Clark | P | 18 | 6-2 | 185 | B | R | College | | Springfield Catholic (Springfield,MO) | |
| 47 | 1371 | June-Reg | Josh Walter | P | 22 | 6-4 | 250 | R | R | A | | Texas State University | |
| 48 | 1393 | June-Reg | Carlos Rivera | OF | 17 | 5-11 | 175 | R | R | - | | East Aurora (Aurora,IL) | |
| 49 | 1414 | June-Reg | Jordan Rogers | P | 20 | 6-2 | 190 | R | R | College | | San Jacinto College | |
| 50 | 1435 | June-Reg | Blake Murphy | C | 22 | 6-1 | 195 | R | R | A+ | | Western Carolina University | |