| 1 | 3 | June-Reg | Jeff Clement | c | 21 | 6-1 | 210 | L | R | MLB | 2007-2008 | USC | $3,400,000 |
| 4 | 113 | June-Reg | Justin Thomas | P | 21 | 6-3 | 220 | L | L | MLB | 2008-2008 | Youngstown State University | $290,000 |
| 5 | 143 | June-Reg | Stephen Kahn | P | 21 | 6-3 | 215 | L | R | AA | | Loyola Marymount University | $190,000 |
| 6 | 173** | June-Reg | Lance Lynn | P | 18 | 6-5 | 250 | R | R | AAA | | Brownsburg (Brownsburg,IN) | $0 |
| 7 | 203 | June-Reg | Robert Rohrbaugh | P | 21 | 6-2 | 195 | R | L | AAA | | Clemson University | $145,000 |
| 8 | 233 | June-Reg | David Asher | P | 22 | 6-1 | 195 | R | L | AAA | | Florida International University | $23,500 |
| 9 | 263 | June-Reg | Bryan Sabatella | 3b | 20 | 6-4 | 220 | R | R | A | | Quinnipiac University | $76,500 |
| 10 | 293 | June-Reg | Ronnie Prettyman | 3B | 23 | 6-2 | 190 | L | R | AAA | | Cal State Fullerton | $17,500 |
| 11 | 323 | June-Reg | Brian Contreras | of | 17 | 6-2 | 175 | B | R | - | | Puerto Rico Baseball Academy (Gurabo,PR) | |
| 12 | 353 | June-Reg | Anthony Varvaro | P | 20 | 6-0 | 180 | R | R | AA | | St. John's University | |
| 13 | 383 | June-Reg | Reed Eastley | ss | 21 | 6-2 | 210 | L | R | A+ | | Niagara University | |
| 14 | 413** | June-Reg | Brad Boyer | 2B | 21 | 6-0 | 185 | L | R | AA | | University of Arizona | |
| 15 | 443** | June-Reg | John Holdzkom | P | 17 | 6-10 | 288 | R | R | A | | Rancho Cucamonga (Rancho Cucamonga,CA) | |
| 16 | 473** | June-Reg | Grant Gerrard | of | 21 | 6-4 | 220 | L | L | A+ | | Southern Illinois University | |
| 17 | 503 | June-Reg | James Russell | P | 19 | 6-4 | 205 | L | L | AAA | | Navarro College | |
| 18 | 533 | June-Reg | Curtis Ledbetter | 1b | 23 | 6-3 | 220 | R | R | A+ | | University of Nebraska | |
| 19 | 563 | June-Reg | Brett Bannister | P | 22 | 6-1 | 190 | R | R | Rookie | | USC | |
| 20 | 593 | June-Reg | Travis Scott | c | 20 | 6-3 | 220 | L | R | A+ | | Lincoln Land Community College | |
| 21 | 623 | June-Reg | Nick Allen | P | 22 | 6-1 | 210 | R | R | A+ | | Villanova University | |
| 22 | 653 | June-Reg | Alex Gary | of | 21 | 6-3 | 225 | R | R | AAA | | Virginia Commonwealth University | |
| 23 | 683 | June-Reg | Ryan Lindgren | P | 18 | 6-3 | 185 | R | R | - | | Stillwater Area (Stillwater,MN) | |
| 24 | 713 | June-Reg | Kevin Gergel | C | 23 | 6-4 | 225 | L | R | A+ | | Kennesaw State University | |
| 25 | 743 | June-Reg | Will Brown | P | 17 | 6-4 | 215 | L | L | A- | | Downey (Modesto,CA) | |
| 26 | 773 | June-Reg | Ari Kafka | P | 21 | 6-6 | 230 | R | R | A- | | Quinnipiac University | |
| 27 | 803 | June-Reg | Jeremy Hill | P | 18 | 6-7 | 240 | R | R | Ind | | Ohlone College | |
| 28 | 833 | June-Reg | Lance Beus | P | 22 | 6-1 | 180 | L | L | A+ | | Brigham Young University | |
| 29 | 863 | June-Reg | Eric Thomas | OF | 18 | 5-11 | 170 | R | R | - | | Buchholz (Gainesville,FL) | |
| 30 | 893 | June-Reg | Aric Van Gaalen | P | 20 | 6-6 | 185 | R | L | Ind | | Lethbridge Community College | |
| 31 | 923 | June-Reg | Jeff Gilmore | P | 21 | 6-2 | 200 | R | R | A | | Stanford University | |
| 32 | 953 | June-Reg | Corby Heckman | 2B | 23 | 6-1 | 185 | R | R | A | | Indiana University | |
| 33 | 983 | June-Reg | Julian Henson | c | 18 | 5-10 | 190 | R | R | AA | | Cordova (Cordova,TN) | |
| 34 | 1013 | June-Reg | Andrew Schneider | P | 18 | 6-2 | 185 | R | R | - | | Franklin (Franklin,TX) | |
| 35 | 1043 | June-Reg | Blake Amador | of | 19 | 6-1 | 175 | L | L | College | | Modesto Junior College | |
| 36 | 1073 | June-Reg | Max Kwan | c | 18 | 6-2 | 210 | R | R | College | | | |
| 37 | 1103 | June-Reg | Jesse Costa | P | 18 | 6-1 | 210 | R | R | - | | Magnolia (Anaheim,CA) | |
| 38 | 1133** | June-Reg | Joe Agreste | 1b | 18 | 6-4 | 195 | L | L | College | | Greenbrier Christian Academy (Chesapeake,VA) | |
| 39 | 1163 | June-Reg | Duke Welker | P | 19 | 6-7 | 220 | L | R | A | | Seminole State College | |
| 40 | 1192 | June-Reg | Eugene Edwards | OF | 20 | 6-6 | 215 | L | R | College | | Long Beach City College | |
| 41 | 1221 | June-Reg | Joe White | 1b | 19 | 6-3 | 210 | L | R | A | | Georgia Perimeter College | |
| 42 | 1250 | June-Reg | Kevin Reynolds | OF | 22 | 6-1 | 180 | L | L | AAA | | Quincy University | |
| 43 | 1279** | June-Reg | Philip Roy | P | 17 | 6-4 | 175 | R | R | A- | | Southridge (Miami,FL) | |
| 44 | 1308** | June-Reg | Paul Patterson | P | 21 | 6-7 | 200 | R | R | A | | Northern Kentucky University | |
| 45 | 1337 | June-Reg | Luis Coste | OF | | | | | | - | | Cochise College | |
| 46 | 1366 | June-Reg | Worth Lumry | P | 22 | 6-3 | 210 | L | L | Rookie | | Princeton University | |
| 47 | 1395 | June-Reg | Andy Hargrove | 1b | 23 | 6-1 | 240 | R | L | AA | | Kent State University | |
| 48 | 1423 | June-Reg | Matt Gardner | P | 20 | 6-2 | 230 | R | R | College | | Grayson County College | |
| 49 | 1450** | June-Reg | Dennis Raben | 1b | 17 | 6-3 | 220 | L | L | A- | | St. Thomas Aquinas (Fort Lauderdale,FL) | $0 |
| 50 | 1477 | June-Reg | Xavier Scruggs | 1B | 17 | 6-1 | 220 | R | R | A | | Poway (Poway,CA) | |