| 4 | 132 | June-Reg | Ben Copeland | of | 21 | 6-1 | 195 | L | L | AAA | | University of Pittsburgh | $227,000 |
| 5 | 162 | June-Reg | Dan Griffin | P | 20 | 6-3 | 190 | R | R | AAA | | Niagara University | $170,000 |
| 6 | 192** | June-Reg | Brad Cuthbertson | P | 20 | 5-10 | 175 | R | R | A | | Lethbridge Community College | |
| 7 | 222 | June-Reg | Joe Dyche | OF | 22 | 6-1 | 185 | R | R | A+ | | Lewis-Clark State College | $90,000 |
| 8 | 252** | June-Reg | Scott Bridges | 2B | | | | | | College | | University of Arkansas | |
| 9 | 282 | June-Reg | Anthony Contreras | ss | 21 | 5-11 | 185 | L | R | AA | | San Jose State University | $7,500 |
| 10 | 312 | June-Reg | Nick Pereira | P | 22 | 6-0 | 190 | R | R | AAA | | University of San Francisco | $7,500 |
| 11 | 342 | June-Reg | Henry Gutierrez | c | 22 | 5-11 | 205 | R | R | A | | Troy University | |
| 12 | 372 | June-Reg | Joe Martinez | P | 22 | 6-3 | 185 | L | R | MLB | 2009-2009 | Boston College | |
| 13 | 402 | June-Reg | Taylor Wilding | P | 20 | 6-1 | 190 | R | R | AA | | Cal Poly Pomona | |
| 14 | 432 | June-Reg | Brian Anderson | P | 22 | 6-3 | 210 | R | R | AA | | Long Beach State University | |
| 15 | 462 | June-Reg | Alex Hinshaw | P | 22 | 6-3 | 170 | L | L | MLB | 2008-2009 | San Diego State University | |
| 16 | 492 | June-Reg | Buck Cody | P | 23 | 6-2 | 195 | L | L | A | | University of Texas | |
| 17 | 522 | June-Reg | Mark Minicozzi | 3B | 22 | 6-1 | 210 | R | R | AA | | East Carolina University | |
| 18 | 552** | June-Reg | Chad Wagler | P | 21 | 6-1 | 185 | R | R | AA | | Kent State University | |
| 19 | 582** | June-Reg | Brandon Grabham | P | 19 | 6-5 | 220 | R | R | A- | | Grayson County College | |
| 20 | 612 | June-Reg | Jonathan Gaston | of | 18 | 6-0 | 210 | L | R | A+ | | Borah (Boise,ID) | |
| 21 | 642 | June-Reg | Robert Grace | P | 22 | 6-1 | 165 | R | R | AA | | College of the Desert | |
| 22 | 672 | June-Reg | Tayler Creswell | of | 18 | 6-1 | 170 | R | R | AAA | | Deer Valley (Antioch,CA) | |
| 23 | 702 | June-Reg | David Maroul | 3b | 22 | 6-2 | 210 | R | R | AAA | | University of Texas | |
| 24 | 732 | June-Reg | James Simmons | OF | 19 | 6-3 | 202 | R | R | A+ | | Vernon College | |
| 25 | 762 | June-Reg | Barry Gunther | c | 23 | 6-0 | 190 | B | R | AAA | | University of Mississippi | |
| 26 | 792 | June-Reg | Ivan Rusova | P | 18 | 6-1 | 180 | R | R | A- | | Oasis Alternative (Toronto,ON) | |
| 27 | 822** | June-Reg | Johnny Monell | c | 19 | 5-11 | 205 | L | R | A | | Columbus (Bronx,NY) | |
| 28 | 852 | June-Reg | Sergio Romo | P | 22 | 6-0 | 185 | R | R | MLB | 2008-2009 | Mesa State College | |
| 29 | 882 | June-Reg | Angel Nicolas | SS | 18 | 5-10 | 190 | R | R | - | | Killian (Miami,FL) | |
| 30 | 912 | June-Reg | Erik Meyer | P | 22 | | 0 | | | - | | University of Eastern Washington | |
| 31 | 942 | June-Reg | Wayne Foltin | P | 22 | 6-2 | 200 | R | R | A+ | | UNLV | |
| 32 | 972 | June-Reg | Damon Brewer | P | 19 | 6-3 | 210 | L | L | - | | Lake City Community College | |
| 33 | 1002 | June-Reg | Chris Todd | 2b | 22 | 5-10 | 170 | B | R | A- | | Coastal Carolina University | |
| 34 | 1032** | June-Reg | Matt Long | P | 21 | 6-5 | 220 | R | R | AAA | | Miami University | |
| 35 | 1062 | June-Reg | Antoan Richardson | of | 21 | 5-8 | 165 | B | R | AA | | Vanderbilt University | |
| 36 | 1092 | June-Reg | Thomas Neal | of | 17 | 6-1 | 205 | R | R | A+ | | Poway (Poway,CA) | |
| 37 | 1122 | June-Reg | David Newton | P | 19 | 5-11 | 200 | R | R | A+ | | West Valley College | |
| 38 | 1152 | June-Reg | Ben Nieto | P | 21 | 5-11 | 225 | L | L | A | | Riverside Community College | |
| 39 | 1181 | June-Reg | Melvin Blackmon | P | 18 | 6-0 | 185 | L | L | College | | Temecula Valley (Temecula,CA) | |
| 40 | 1210 | June-Reg | Kurt Lipton | OF | 17 | 6-5 | 195 | L | R | College | | | |
| 41 | 1239** | June-Reg | Bo Merrell | ss | 19 | 6-3 | 185 | R | R | College | | Perryton (Perryton,TX) | |
| 42 | 1268 | June-Reg | Tony Snow | P | 21 | 6-4 | 210 | R | R | A- | | Edmonds Community College | |
| 43 | 1297 | June-Reg | Chris Stanton | 1b | 22 | 6-2 | 175 | R | R | A- | | Virginia Tech | |
| 44 | 1326 | June-Reg | Reggie Fuller | P | 18 | 6-4 | 190 | L | L | - | | Diablo Valley College | |
| 45 | 1355 | June-Reg | Eric Dworkis | P | 22 | 6-6 | 200 | R | R | College | | University of California | |
| 46 | 1384** | June-Reg | Jared Cranston | P | 20 | 6-2 | 195 | B | L | A | | Seward County Community College | |
| 47 | 1413 | June-Reg | George Snyder | P | 18 | 6-3 | 190 | R | R | College | | Chaffey College | |
| 48 | 1441 | June-Reg | Adam Ortiz-Jusino | P | 20 | 6-3 | 190 | R | R | A | | Brookdale Community College | |
| 49 | 1468 | June-Reg | Curtis Partch | P | 18 | 6-5 | 210 | R | R | AA | | Merced (Merced,CA) | |
| 50 | 1495 | June-Reg | Justin Robertson | P | 17 | 6-1 | 190 | R | R | - | | Nipomo (Nipomo,CA) | |