| 102. | Daryl Jones | 1B | SD | 17 | 9/1/1986 | 6-3 | 200 | R-R | A | | Westchester High School (Los Angeles,CA) | 23 |
| 105. | Matt Spring | C | TB | 19 | 11/7/1984 | 6-2 | 215 | R-R | AA | | Dixie State College of Utah | 13 |
| 107. | Chuck Lofgren | P | CLE | 18 | 1/29/1986 | 6-3 | 190 | L-L | AAA | | Serra High School (San Mateo,CA) | 18 |
| 109. | Brad Bergesen | P | BAL | 18 | 9/25/1985 | 6-2 | 205 | L-R | A+ | | Foothill High School (Pleasanton,CA) | 1 |
| 110. | Chris Iannetta | C | COL | 21 | 4/8/1983 | 5-11 | 195 | R-R | MLB | 2006-2007 | University of North Carolina | 130 |
| 113. | Patrick White | OF | ANA | 18 | 2/25/1986 | 6-1 | 185 | L-L | - | | Daphne High School (Daphne,AL) | 1 |
| 118. | Javy Guerra | P | LA | 18 | 10/31/1985 | 6-1 | 185 | R-R | A+ | | Ryan High School (Denton,TX) | 4 |
| 119. | Lucas Harrell | P | CHW | 19 | 6/3/1985 | 6-2 | 200 | B-R | AA | | Ozark High School (Ozark,MO) | 1 |
| 122. | Louis Marson | C | PHI | 18 | 6/26/1986 | 6-1 | 195 | R-R | A+ | | Coronado High School (Scottsdale,AZ) | 13 |
| 126. | Chris Shaver | P | CHC | 22 | 8/21/1981 | 6-7 | 235 | L-L | AA | | College of William and Mary | 20 |
| 130. | Clay Timpner | OF | SF | 21 | 5/13/1983 | 6-2 | 197 | L-L | AAA | | University of Central Florida | 67 |
| 131. | James Parr | P | ATL | 18 | 2/27/1986 | 6-1 | 185 | R-R | AA | | La Cueva High School (Albuquerque,NM) | 8 |