| # | Player Name | Pos | Team | Age | Born | Ht | Wt | B-T | High Level | MLB Years | Drafted From | # |
| 972. | Adam Miller | P | SD | 19 | 4/18/1985 | 5-11 | 180 | R-R | College | | Indian Hills Community College-Ottumwa | 3 |
| 973. | Kevin Brower | P | DET | 22 | 11/12/1981 | 5-11 | 190 | R-R | Ind | | University of North Carolina | 133 |
| 974. | Mark Fisher | 2B | NYM | | | 6-3 | 195 | R-R | College | | University of California-Irvine | 37 |
| 975. | Patrick Cottrell | SS | TB | 22 | 3/16/1982 | 5-11 | 160 | R-R | AA | | University of West Florida | 10 |
| 976. | Luis Bernal | P | MIL | 21 | 1/24/1983 | 6-1 | 195 | R-R | Rookie | | Pima Community College | 46 |
| 977. | Paul Lubrano | P | CLE | 22 | 12/19/1981 | 6-1 | 170 | L-L | A+ | | University of Georgia | 79 |
| 978. | Dylan Moseley | P | CIN | 18 | 6/18/1986 | 6-4 | 185 | R-R | College | | Arkansas High School (Texarkana,AR) | 8 |
| 979. | Jared Elmore | P | BAL | | | | | - | - | | Raymond High School (Raymond,MS) | 1 |
| 980. | Justin Jameson | OF | COL | 18 | 7/12/1985 | | | L-L | - | | Southern Union State Community College | 16 |
| 981. | Luis Rodriguez | SS | TEX | | | | | - | Rookie | | New Mexico Junior College | 27 |
| 982. | Justin Byler | C | PIT | 18 | 8/12/1985 | 6-2 | 212 | R-R | A- | | Warren G. Harding High School (Warren,OH) | 1 |
| 983. | Frederic Carney | P | ANA | 21 | 8/21/1982 | 6-3 | 220 | R-R | Rookie | | Regis University (Colorado) | 9 |
| 984. | Chris Whisenhunt | P | MTL | | | | | - | - | | Fort Worth Christian High School (North Richland Hills,TX) | 1 |
| 985. | Jimmy Wallace | P | KC | | | | | - | - | | Pratt Community College | 8 |
| 986. | Joseph Campbell | 3B | ARI | | | | | - | - | | Fremd High School (Palatine,IL) | 4 |
| 987. | Greg Powers | 3B | TOR | 23 | 5/14/1981 | 6-0 | 180 | L-R | A- | | University of California-Santa Barbara | 85 |
| 988. | James Gilbert | P | LA | 19 | 4/2/1985 | | | - | Rookie | | Chabot College | 102 |
| 989. | Brandon Cooney | P | CHW | 18 | 8/2/1985 | 6-6 | 240 | R-R | Rookie | | Broward Community College | 68 |
| 990. | Michael Gross | P | STL | 22 | 10/4/1981 | 6-4 | 235 | R-R | A | | University of North Carolina | 134 |
| 991. | Sean Kalmen | P | MIN | | | | | - | - | | Katella High School (Anaheim,CA) | 17 |
| 992. | Clary Carlsen | P | PHI | 22 | 5/17/1982 | 6-1 | 200 | R-R | A+ | | University of Hawaii-Manoa | 76 |
| 993. | Marquise Liverpool | OF | SEA | 18 | 4/16/1986 | 5-9 | 185 | R-R | AAA | | Don Bosco Prep High School (Ramsey,NJ) | 2 |
| 994. | James Cooper | OF | HOU | 22 | 2/12/1982 | 6-3 | 185 | R-R | A- | | Grambling State University | 45 |
| 995. | John Wells | P | BOS | | | | | - | - | | Timber Creek High School (Orlando,FL) | 2 |
| 996. | Randy Brown | OF | CHC | 18 | 11/12/1985 | 6-0 | 172 | R-R | Rookie | | Jonesboro High School (Jonesboro,GA) | 5 |
| 997. | Scott Fairbanks | P | OAK | 23 | 4/26/1981 | 6-3 | 200 | R-R | A- | | Lewis-Clark State College | 84 |
| 998. | Clay Westmoreland | P | FLA | 22 | 6/6/1982 | 5-10 | 185 | R-R | AAA | | University of Utah | 52 |
| 999. | Michael Dunn | 1B | NYY | 19 | 5/23/1985 | 6-1 | 185 | L-L | A+ | | Community College of Southern Nevada | 17 |
| 1000. | Judson Richards | 1B | SF | 23 | 12/25/1980 | 6-2 | 195 | L-L | Ind | | Point Loma Nazarene University (Calif.) | 17 |
| 1001. | Brian Murphy | P | ATL | | | | | - | - | | Torrey Pines High School (San Diego,CA) | 5 |
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