| 1 | 8** | June-Reg | Wade Townsend | P | 21 | 6-4 | 230 | R | R | AA | | Rice University | |
| 3 | 79 | June-Reg | Jeff Fiorentino | C | 21 | 6-1 | 180 | L | R | MLB | 2005-2009 | Florida Atlantic University | $450,000 |
| 4 | 109 | June-Reg | Brad Bergesen | P | 18 | 6-2 | 205 | L | R | MLB | 2009-2009 | Foothill (Pleasanton,CA) | $310,000 |
| 5 | 139 | June-Reg | C.J. Smith | OF | 22 | 6-4 | 212 | R | R | A | | University of Florida | $205,000 |
| 6 | 169 | June-Reg | Bryce Chamberlin | P | 21 | 6-2 | 195 | R | R | A- | | Washington State University | $145,000 |
| 7 | 199** | June-Reg | Seth Johnston | 2B | 21 | 6-3 | 198 | R | R | AAA | | University of Texas | |
| 8 | 229 | June-Reg | David Haehnel | P | 21 | 6-4 | 180 | L | L | AA | | University of Illinois-Chicago | $85,000 |
| 9 | 259 | June-Reg | Joey Howell | OF | 18 | 6-1 | 205 | R | R | A | | Santaluces (Lantana,FL) | $75,000 |
| 10 | 289 | June-Reg | Drew Moffitt | OF | 22 | 6-2 | 210 | R | R | A | | Wichita State University | $5,000 |
| 11 | 319 | June-Reg | Kevin Hart | P | 21 | 6-4 | 215 | R | R | MLB | 2007-2009 | University of Maryland | |
| 12 | 349 | June-Reg | Dan Puente | C | 22 | 6-3 | 200 | R | R | A | | Bradley University | |
| 13 | 379 | June-Reg | Denver Kitch | SS | 23 | 6-2 | 180 | R | R | A | | Oklahoma City University | |
| 14 | 409 | June-Reg | Kyle Schmidt | P | 20 | 6-3 | 220 | R | R | AA | | University of South Florida | |
| 15 | 439** | June-Reg | Will Venable | OF | 21 | 6-2 | 205 | L | L | MLB | 2008-2009 | Princeton University | $0 |
| 16 | 469 | June-Reg | Andy Schindling | P | 17 | 6-2 | 165 | R | R | A | | St. John's College (Washington,DC) | |
| 17 | 499 | June-Reg | Kyle Boehm | P | | 6-1 | 190 | R | R | A- | | Oakland University | |
| 18 | 529 | June-Reg | Trent Baysinger | P | 22 | 6-1 | 185 | L | L | A+ | | University of Washington | |
| 19 | 559 | June-Reg | Matt McGuirk | OF | | | | | | College | | Arlington Heights (Fort Worth,TX) | |
| 20 | 589 | June-Reg | Jonathan Tucker | 2B | 20 | 5-7 | 178 | B | R | AAA | | University of Florida | |
| 21 | 619 | June-Reg | Ryan Finan | 1B | 22 | 6-5 | 220 | L | R | AA | | Lamar University | |
| 22 | 649 | June-Reg | Rob Marconi | 3B | 21 | 6-1 | 200 | R | R | A | | Northern Illinois University | |
| 23 | 679 | June-Reg | Ryan Schwabe | P | 22 | 6-3 | 210 | L | L | A | | University of Louisiana-Monroe | |
| 24 | 709 | June-Reg | Dale Mollenhauer | SS | 18 | 5-10 | 170 | L | R | A+ | | Pine-Richland (Gibsonia,PA) | |
| 25 | 739 | June-Reg | Zach Minor | P | | | | | | Rookie | | Northern Illinois University | |
| 26 | 769 | June-Reg | Kevin Kotch | C | 19 | 6-4 | 235 | L | R | A- | | Cecil College | |
| 27 | 799 | June-Reg | Cody Wargo | C | 22 | 6-3 | 210 | R | R | A+ | | Indiana University | |
| 28 | 829 | June-Reg | Alex Graham | P | 22 | 6-5 | 230 | R | R | College | | University of the Pacific | |
| 29 | 859 | June-Reg | Marc Young | P | | | | | | - | | Riverside (Greer,SC) | |
| 30 | 889 | June-Reg | Jaime Garcia | P | 17 | 6-2 | 200 | L | L | MLB | 2008-2008 | Sharyland (Sharyland,TX) | |
| 31 | 919 | June-Reg | Matthew Garnett | P | 19 | 6-7 | 220 | L | L | - | | Bakersfield College | |
| 32 | 949 | June-Reg | Ray Jeffords | P | 19 | 6-0 | 200 | R | R | AA | | Spartanburg Methodist College | |
| 33 | 979 | June-Reg | Jared Elmore | P | | | | | | - | | Raymond (Raymond,MS) | |
| 34 | 1009 | June-Reg | Nick Burns | C | | | | | | - | | Palomar College | |
| 35 | 1039 | June-Reg | Drew Crisp | SS | | | | | | - | | Riverside (Greer,SC) | |
| 36 | 1069 | June-Reg | Derik Drewett | P | 19 | 6-5 | 185 | R | R | College | | University of Arkansas-Fort Smith | |
| 37 | 1099 | June-Reg | Ian Harrington | P | 19 | 6-1 | 195 | L | L | A | | Bellevue Community College | |
| 38 | 1129 | June-Reg | Adam Crisp | OF | 18 | 6-0 | 170 | R | R | College | | Riverside (Greer,SC) | |
| 39 | 1159 | June-Reg | Larry Hill | P | | | | | | - | | Smit (Spring Branch,TX) | |
| 40 | 1189 | June-Reg | Jason Roach | P | 20 | 5-10 | 180 | L | L | Ind | | Sacramento City College | |
| 41 | 1219 | June-Reg | Demetrios Marinos | C | | | | | | - | | Steinert (Trenton,NJ) | |
| 42 | 1248 | June-Reg | Brian Blackburn | C | | | | | | College | | Kellogg Community College | |
| 43 | 1277** | June-Reg | Bryan Casey | C | 18 | 6-1 | 200 | R | R | A | | Kofa (Yuma,AZ) | |
| 44 | 1306** | June-Reg | Leonardo Calderon | P | 17 | 5-11 | 170 | L | L | A | | Puerto Rico Baseball Academy (Gurabo,PR) | |
| 45 | 1335 | June-Reg | Samuel Basta | P | 18 | 6-0 | 165 | L | L | Rookie | | Marquette University (Milwaukee,WI) | |
| 46 | 1364 | June-Reg | Casey Larson | OF | 18 | 6-1 | 180 | L | R | College | | Paso Robles (Paso Robles,CA) | |
| 47 | 1393 | June-Reg | Bailey Daniels | P | 18 | 6-0 | 224 | R | R | College | | Manteo (Manteo,NC) | |
| 48 | 1422** | June-Reg | Matt Lane | P | 19 | 6-8 | 225 | R | R | A | | Iowa Western Community College | |
| 49 | 1450 | June-Reg | Clifton Turner | OF | | | | | | - | | Community College of Baltimore County-Catonsville | |
| 50 | 1478 | June-Reg | Michael Banks | P | 19 | 6-4 | 225 | R | R | - | | Lake Michigan College | |