| 1 | 1 | June-Reg | Matt Bush | SS | 18 | 5-11 | 170 | R | R | A+ | | Mission Bay (San Diego,CA) | $3,150,000 |
| 3 | 72 | June-Reg | Billy Killian | C | 18 | 6-1 | 190 | L | R | AAA | | Chippewa Hills (Remus,MI) | $450,000 |
| 4 | 102 | June-Reg | Daryl Jones | 1B | 17 | 6-3 | 200 | R | R | A | | Westchester (Los Angeles,CA) | $375,000 |
| 5 | 132 | June-Reg | Sean Kazmar | SS | 19 | 5-9 | 160 | R | R | MLB | 2008-2008 | College of Southern Nevada | $200,000 |
| 6 | 162 | June-Reg | Jonathan Ellis | P | 21 | 6-0 | 190 | R | R | AAA | | The Citadel | $140,000 |
| 7 | 192 | June-Reg | Richard Steik | P | 20 | 6-3 | 210 | L | R | AAA | | Golden West College | $130,000 |
| 8 | 222 | June-Reg | Vern Sterry | P | 22 | 6-2 | 195 | R | R | AAA | | North Carolina State University | $15,000 |
| 9 | 252 | June-Reg | David O'Hagan | P | 22 | 6-1 | 200 | R | R | A- | | Stanford University | $25,000 |
| 10 | 282 | June-Reg | Chris Kolkhorst | OF | 22 | 5-9 | 180 | L | R | A+ | | Rice University | $15,000 |
| 11 | 312 | June-Reg | Matt Varner | P | 22 | 5-11 | 200 | R | R | A+ | | University of Houston | |
| 12 | 342 | June-Reg | Mike Ekstrom | P | 20 | 6-0 | 185 | R | R | MLB | 2008-2009 | Point Loma Nazarene University | |
| 13 | 372 | June-Reg | Jake Vose | P | 22 | 5-10 | 185 | L | L | A- | | UNLV | |
| 14 | 402 | June-Reg | Matt Montgomery | P | | | | | | - | | Northwest Florida State College | |
| 15 | 432** | June-Reg | Brandon Thomson | P | | | | | | Rookie | | Gilbert (Gilbert,AZ) | |
| 16 | 462 | June-Reg | Ben Krosschell | P | 18 | 6-1 | 165 | R | R | A | | Highlands Ranch (Highlands Ranch,CO) | |
| 17 | 492 | June-Reg | Clayton Hamilton | P | 22 | 6-5 | 200 | R | R | AAA | | Penn State University | |
| 18 | 522 | June-Reg | Michael Moon | 3B | 22 | 6-0 | 210 | L | R | College | | USC | |
| 19 | 552 | June-Reg | Craig Johnson | OF | 22 | 6-1 | 185 | L | L | A+ | | Sacramento State | |
| 20 | 582 | June-Reg | Brian Fryer | OF | 21 | 6-1 | 190 | R | R | AAA | | New Mexico Highlands University | |
| 21 | 612 | June-Reg | Gary Gallegos | P | 22 | 6-4 | 210 | L | L | A- | | Biola University | |
| 22 | 642 | June-Reg | Kyle Stutes | P | 22 | 5-10 | 185 | L | L | AAA | | Lamar University | |
| 23 | 672 | June-Reg | Rielly Embrey | 1B | 22 | 6-2 | 200 | L | R | A- | | San Diego State University | |
| 24 | 702 | June-Reg | Jodam Rivera | SS | 18 | 5-10 | 180 | B | R | AA | | Puerto Rico Baseball Academy (Gurabo,PR) | |
| 25 | 732 | June-Reg | Brian Burks | P | 23 | 5-9 | 176 | R | R | A- | | Georgia Tech | |
| 26 | 762 | June-Reg | Kelvin Vazquez | SS | 20 | 6-1 | 170 | B | R | A | | Indian Hills Community College-Ottumwa | |
| 27 | 792 | June-Reg | Orlando Diaz | 3B | 22 | 6-2 | 195 | R | R | A- | | Jacksonville University | |
| 28 | 822 | June-Reg | B.J. Jenkins | P | 22 | 6-2 | 195 | R | R | Rookie | | Trevecca Nazarene University | |
| 29 | 852 | June-Reg | E.J. Shanks | P | 22 | 6-5 | 230 | R | R | AA | | Oklahoma City University | |
| 30 | 882 | June-Reg | Adam Kroft | P | 22 | 6-5 | 230 | R | R | A- | | University at Albany | |
| 31 | 912 | June-Reg | Matt Thayer | OF | 22 | 5-10 | 173 | R | L | A+ | | UCLA | |
| 32 | 942 | June-Reg | Toddric Johnson | OF | 19 | 6-1 | 195 | L | L | A+ | | Meridian Community College | |
| 33 | 972 | June-Reg | Adam Miller | P | 19 | 5-11 | 180 | R | R | College | | Indian Hills Community College-Ottumwa | |
| 34 | 1002** | June-Reg | Gary Moran | P | 19 | 6-8 | 265 | R | R | A- | | Fresno City College | |
| 35 | 1032 | June-Reg | Joshua Bartusick | 1B | 20 | | 0 | | | - | | Golden West College | |
| 36 | 1062** | June-Reg | Chorye Spoone | P | 18 | 6-1 | 215 | R | R | AA | | Catonsville Community College | $0 |
| 37 | 1092 | June-Reg | Erik Lovett | OF | 18 | 6-2 | 215 | L | L | A- | | Louisburg College | |
| 38 | 1122 | June-Reg | Mike Lorentson | P | 18 | 6-4 | 195 | L | L | College | | Malvern Prep (Malvern,PA) | |
| 39 | 1152 | June-Reg | Bobby Spain | 3B | 19 | 6-4 | 205 | L | R | A | | Norman (Norman,OK) | |
| 40 | 1182 | June-Reg | Brandon Kintzler | P | 19 | 6-1 | 180 | R | R | AA | | Dixie State College of Utah | |
| 41 | 1212 | June-Reg | Taylor Bennett | P | | | | | | - | | Northwest Florida State College | |
| 42 | 1241 | June-Reg | Kyle Blanks | 1B | 17 | 6-6 | 270 | R | R | MLB | 2009-2009 | Moriarty (Edgewood,NM) | |
| 43 | 1270 | June-Reg | Zach Shadle | P | 19 | 6-4 | 195 | R | R | - | | Tacoma Community College | |
| 44 | 1299 | June-Reg | Omar Kadir | P | 19 | 6-4 | 180 | R | R | College | | Lethbridge Community College | |
| 45 | 1328 | June-Reg | Cameron Nickell | OF | | | | | | - | | Columbia State Community College | |
| 46 | 1357** | June-Reg | Aaron Breit | P | 18 | 6-3 | 180 | R | R | A+ | | Thomas More Prep (Hays,KS) | |
| 47 | 1386 | June-Reg | Sean Cunningham | 3B | | | | | | - | | Sinclair SS (ON) | |
| 48 | 1415 | June-Reg | David Minor | OF | | | | | | - | | South Hagerstown (Hagerstown,MD) | |
| 49 | 1443 | June-Reg | Brandon Tuten | P | 18 | 6-0 | 185 | R | R | AAA | | Mount Pleasant (Mount Pleasant,TN) | |
| 50 | 1471 | June-Reg | Brian Joynt | 1B | 19 | 6-3 | 220 | R | R | AA | | Indian Hills Community College-Ottumwa | |