| 1 | 13 | June-Reg | Bill Bray | P | 21 | 6-3 | 215 | L | L | MLB | 2006-2008 | College of William and Mary | $1,750,000 |
| 2 | 54 | June-Reg | Erick San Pedro | C | 20 | 6-0 | 205 | R | R | AAA | | University of Miami | $650,000 |
| 3 | 84 | June-Reg | Ian Desmond | SS | 18 | 6-2 | 185 | R | R | MLB | 2009-2009 | Sarasota (Sarasota,FL) | $430,000 |
| 4 | 114 | June-Reg | Collin Balester | P | 18 | 6-5 | 190 | R | R | MLB | 2008-2009 | Huntington Beach (Huntington Beach,CA) | $290,000 |
| 5 | 144 | June-Reg | Greg Bunn | P | 21 | 6-1 | 210 | R | R | A+ | | East Carolina University | $190,000 |
| 6 | 174 | June-Reg | Devin Ivany | C | 21 | 6-1 | 178 | R | R | AA | | University of South Florida | $160,000 |
| 7 | 204 | June-Reg | Marvin Lowrance | OF | 19 | 6-0 | 215 | L | L | AA | | Golden West College | $100,000 |
| 8 | 234 | June-Reg | Leonard Davis | 3B | 20 | 5-10 | 195 | L | R | AAA | | Fresno City College | $75,000 |
| 9 | 264 | June-Reg | Brandon Conway | SS | 20 | 6-3 | 190 | L | R | A- | | Frederick Community College | $45,000 |
| 10 | 294 | June-Reg | Duron Legrande | OF | 23 | 6-2 | 185 | L | L | A- | | North Carolina A&T State University | $10,000 |
| 11 | 324 | June-Reg | David Trahan | P | 23 | 6-3 | 185 | R | R | AA | | Alvin Community College | |
| 12 | 354** | June-Reg | Robert Mosebach | OF | 19 | 6-4 | 195 | R | R | MLB | 2009-2009 | Hillsborough Community College | |
| 13 | 384 | June-Reg | David Travis | 2B | 23 | 6-4 | 210 | L | R | A- | | Southern Wesleyan University | |
| 14 | 414 | June-Reg | Lyndsey Simmons | C | 22 | 6-0 | 200 | L | R | Ind | | New York Institute of Technology | |
| 15 | 444** | June-Reg | Mike Wlodarczyk | P | 21 | 6-5 | 230 | L | L | AAA | | Boston College | |
| 16 | 474 | June-Reg | Thomas Wilson | P | 22 | 6-2 | 185 | R | L | A+ | | Catawba College. | |
| 17 | 504 | June-Reg | John Poppert | C | 22 | 6-1 | 210 | R | R | AAA | | East Carolina University | |
| 18 | 534 | June-Reg | Matt Perks | P | 18 | 6-7 | 200 | R | R | A | | Mercer County Community College | |
| 19 | 564 | June-Reg | Ben Cox | P | 22 | 6-2 | 210 | L | R | AA | | Lamar University | |
| 20 | 594 | June-Reg | Wendell Yost | P | 23 | 6-3 | 185 | R | L | A+ | | Averett University | |
| 21 | 624** | June-Reg | Ibrahim Lopez | OF | | | | | | - | | Puerto Rico Baseball Academy (Gurabo,PR) | |
| 22 | 654 | June-Reg | Aaron Jackson | P | 18 | 6-0 | 175 | B | R | A | | St. Augustine (St. Augustine,FL) | |
| 23 | 684 | June-Reg | Ryan Harrison | P | 17 | 6-2 | 190 | R | R | A | | South Carroll (Sykesville,MD) | |
| 24 | 714 | June-Reg | Steven Hornostaj | SS | 18 | 6-3 | 180 | L | R | - | | St. David Catholic (Waterloo,ON) | |
| 25 | 744 | June-Reg | Steven Cook | P | 22 | 6-4 | 205 | R | R | A | | University of North Carolina-Asheville | |
| 26 | 774 | June-Reg | Gabe Suarez | SS | 19 | 6-0 | 185 | R | R | A+ | | South Mountain Community College | |
| 27 | 804 | June-Reg | Ladd Hall | P | 22 | 6-3 | 205 | R | R | College | | Arizona State University | |
| 28 | 834 | June-Reg | Chris Lugo | P | 17 | 6-1 | 185 | R | R | A+ | | Hudson Catholic Regional (Jersey City,NJ) | |
| 29 | 864** | June-Reg | Steven Hirschfeld | P | 18 | 6-5 | 220 | R | R | A+ | | Grand County (Moab,UT) | |
| 30 | 894 | June-Reg | Brendan Murphy | 1B | 19 | 6-3 | 210 | R | R | Ind | | Garden City Community College | |
| 31 | 924** | June-Reg | P.J. Treadaway | P | | | | | | College | | Archbishop Hannan (Meraux,LA) | |
| 32 | 954** | June-Reg | Matt Averitt | P | | | | | | - | | New Mexico Junior College | |
| 33 | 984 | June-Reg | Chris Whisenhunt | P | | | | | | - | | Fort Worth Christian (North Richland Hills,TX) | |
| 34 | 1014 | June-Reg | Richard Campbell | P | 22 | 6-0 | 175 | R | R | MLB | 2006-2006 | Kennesaw State University | |
| 35 | 1044 | June-Reg | Rudy Garza | P | 20 | 6-2 | 190 | R | R | A | | Hill College | |
| 36 | 1074 | June-Reg | Todd Nicholas | P | 21 | 6-2 | 208 | R | L | College | | Troy University | |
| 37 | 1104** | June-Reg | Jamie Gant | P | 21 | 6-2 | 190 | R | R | A | | Mississippi State University | |
| 38 | 1134 | June-Reg | Daniel Cooper | P | 17 | 6-3 | 203 | R | R | A | | Costa Mesa (Costa Mesa,CA) | |
| 39 | 1164 | June-Reg | Brian Peacock | C | 19 | 6-1 | 185 | R | R | A+ | | State College of Florida, Manatee-Sarasota | |
| 40 | 1194 | June-Reg | Melvin Perez | 3B | | | | | | Rookie | | George Washington (New York,NY) | |
| 41 | 1224 | June-Reg | Joe Dunigan | OF | 18 | 6-1 | 215 | L | L | A+ | | St. Ignatius (Chicago,IL) | |
| 42 | 1253 | June-Reg | Brent Gaphardt | P | 20 | 6-5 | 230 | L | L | Rookie | | CCBC Dundalk | |
| 43 | 1282 | June-Reg | Andy Gale | P | 18 | 6-6 | 230 | R | R | College | | Phillips Exeter Academy (Exeter,NH) | |
| 44 | 1311 | June-Reg | Phillip Valle | SS | | | | | | - | | Bellevue Christian (Clyde Hill,WA) | |
| 45 | 1340 | June-Reg | Austin Reilly | SS | | 5-10 | 190 | R | R | College | | Fort Worth Country Day (Fort Worth,TX) | |
| 46 | 1369 | June-Reg | Robert Molinaro | SS | | | | | | - | | American Heritage (Delray Beach,FL) | |
| 47 | 1398 | June-Reg | Jonathan Del Franco | P | | | | | | - | | Bridgewater Raritan (Bridgewater,NJ) | |
| 48 | 1427 | June-Reg | Carlos Ceron | P | | | | | | - | | Miami-Dade College | |
| 49 | 1455 | June-Reg | Patrick Kanakevich | P | | | | | | - | | Georgetown Prep (North Bethesda,MD) | |
| 50 | 1483 | June-Reg | Joel Collins | C | 18 | 6-1 | 200 | R | R | A+ | | Cardinal Carter (Richmond Hill,ON) | |