| 1 | 11 | June-Reg | Michael Aubrey | 1B | 21 | 6-1 | 195 | L | L | MLB | 2008-2009 | Tulane University | $2,010,000 |
| 1 | 18 | June-Reg | Brad Snyder | OF | 21 | 6-3 | 210 | L | L | AAA | | Ball State University | $1,525,000 |
| 1 | 31 | June-Reg | Adam Miller | P | 18 | 6-4 | 180 | R | R | AAA | | McKinney (McKinney,TX) | $1,025,000 |
| 2 | 48 | June-Reg | Javier Herrera | C | 21 | 6-2 | 190 | R | R | AAA | | University of Tennessee | $710,000 |
| 3 | 78 | June-Reg | Ryan Garko | C | 22 | 6-1 | 220 | R | R | MLB | 2005-2009 | Stanford University | $270,000 |
| 4 | 108** | June-Reg | Ben Harrison | OF | 21 | 6-4 | 220 | R | R | AAA | | University of Florida | |
| 5 | 138 | June-Reg | Juan Valdes | OF | 18 | 6-0 | 150 | B | R | AA | | Fernando Callejo (Manati,PR) | $210,000 |
| 6 | 168 | June-Reg | Kevin Kouzmanoff | 3B | 21 | 6-1 | 200 | R | R | MLB | 2006-2009 | University of Nevada | $45,000 |
| 7 | 198 | June-Reg | Matt Davis | P | 21 | 6-2 | 200 | R | R | AA | | Ohio State University | $120,000 |
| 8 | 228 | June-Reg | Bo Ashabraner | P | 22 | 6-7 | 230 | R | R | A | | Long Beach State University | $25,000 |
| 9 | 258 | June-Reg | Anthony Lunetta | SS | 22 | 5-10 | 185 | R | R | AA | | USC | $15,000 |
| 10 | 288 | June-Reg | Scott Roehl | P | 21 | 6-0 | 200 | R | R | AAA | | University of Arkansas | $55,000 |
| 11 | 318 | June-Reg | Ryan Mulhern | OF | 22 | 6-2 | 200 | R | R | AAA | | University of South Alabama | |
| 12 | 348 | June-Reg | Brandon Pinckney | SS | 21 | 5-9 | 165 | R | R | AAA | | Sacramento City College | |
| 13 | 378 | June-Reg | Steven Reinhold | 2B | 18 | 5-8 | 175 | R | R | College | | Tuscola (Waynesville,NC) | |
| 14 | 408 | June-Reg | Chase Williams | OF | 18 | 6-3 | 190 | R | R | Rookie | | A&M Consolidated (College Station,TX) | |
| 15 | 438 | June-Reg | Ryan Spilman | C | 18 | 6-2 | 185 | R | R | AA | | Mount Vernon (Mount Vernon,IN) | |
| 16 | 468 | June-Reg | Aaron Laffey | P | 18 | 6-1 | 178 | L | L | MLB | 2007-2009 | Alleghany (Cumberland,MD) | $363,000 |
| 17 | 498 | June-Reg | Jeff Pry | P | 18 | 6-4 | 205 | R | R | Rookie | | Franklin (Portland,OR) | |
| 18 | 528 | June-Reg | Dusty Barnard | P | 20 | 6-2 | 200 | R | R | College | | Connors State College | |
| 19 | 558 | June-Reg | Joey Huskins | C | 19 | 6-3 | 212 | L | R | Ind | | Cypress College | |
| 20 | 588 | June-Reg | Shane Mathews | P | 18 | 6-3 | 195 | R | R | A+ | | St. Stephens (Hickory,NC) | |
| 21 | 618 | June-Reg | Adam Brandenburg | P | 21 | 6-5 | 225 | L | L | AA | | Kennesaw State University | |
| 22 | 648 | June-Reg | Matt Elliott | P | 19 | 6-0 | 175 | R | R | AA | | Dixie State College of Utah | |
| 23 | 678 | June-Reg | Tim Montgomery | OF | 21 | 6-3 | 205 | R | R | A | | University of Hawaii | |
| 24 | 708 | June-Reg | Ryan Goleski | 1B | 21 | 6-3 | 225 | R | R | AA | | Eastern Michigan University | |
| 25 | 738** | June-Reg | Travis Debondt | P | 19 | 6-4 | 200 | L | L | College | | Bakersfield College | |
| 26 | 768** | June-Reg | Andrew Johnston | P | 19 | 6-5 | 205 | R | R | AA | | Jefferson College | |
| 27 | 798 | June-Reg | Mike Felix | P | 17 | 5-11 | 180 | L | L | A+ | | Rutherford (Panama City,FL) | |
| 28 | 828** | June-Reg | Jason James | OF | 18 | 5-10 | 175 | L | L | Ind | | Kishwaukee College | |
| 29 | 858 | June-Reg | Brett Parker | SS | 22 | 6-0 | 190 | R | R | A+ | | University of South Alabama | |
| 30 | 888 | June-Reg | James Smith | P | 20 | 6-2 | 190 | R | R | - | | Merced College | |
| 31 | 918 | June-Reg | Mark Harris | P | 22 | 6-2 | 200 | R | R | A- | | College of William and Mary | |
| 32 | 948** | June-Reg | Steven Jackson | P | 21 | 6-5 | 215 | R | R | MLB | 2009-2009 | Clemson University | |
| 33 | 978 | June-Reg | Joe Reid | P | 20 | 6-0 | 197 | R | R | - | | St. John's University | |
| 34 | 1008 | June-Reg | Roger Lincoln | P | 22 | 5-10 | 175 | L | L | AA | | Stetson University | |
| 35 | 1038 | June-Reg | Bart Babineaux | OF | 20 | 6-3 | 215 | R | R | College | | El Camino College | |
| 36 | 1068** | June-Reg | Jared Goedert | 3B | 18 | 6-1 | 180 | R | R | AA | | Concordia (Concordia,KS) | |
| 37 | 1098 | June-Reg | Zach Wallis | P | 19 | 6-2 | 180 | L | L | - | | Enid (Enid,OK) | |
| 38 | 1128 | June-Reg | Neall French | C | 19 | 6-3 | 210 | R | R | A | | Grand Rapids Community College | |
| 39 | 1158 | June-Reg | Jim Rapoport | OF | 18 | 5-11 | 160 | L | L | AA | | Chaminade Prep (West Hills,CA) | |
| 40 | 1188** | June-Reg | Adrian Schau | P | 21 | 6-2 | 200 | R | R | A | | Villanova University | |
| 41 | 1218** | June-Reg | Robert Leonhardt | P | 18 | 6-5 | 185 | R | R | A | | Cypress Fairbanks (Cypress,TX) | |
| 42 | 1247 | June-Reg | Adam Hanson | P | 21 | 6-2 | 195 | R | R | AAA | | Wake Forest University | |
| 43 | 1276 | June-Reg | Joe Weaver | P | 21 | 6-4 | 195 | R | R | A- | | Oklahoma State University | |
| 44 | 1304 | June-Reg | Kyle Muschara | P | 18 | 6-2 | 185 | R | R | College | | Lassiter (Marietta,GA) | |
| 45 | 1331 | June-Reg | Rafeal Cotto | OF | 17 | 6-1 | 190 | R | R | - | | Miguel Such (Rio Piedras,PR) | |
| 46 | 1358 | June-Reg | James O'Neill | P | 18 | 6-1 | 180 | L | L | - | | Milford (Highland,MI) | |
| 47 | 1385 | June-Reg | Chad Corona | 3B | 21 | 6-4 | 227 | R | R | College | | San Diego State University | |
| 48 | 1412 | June-Reg | Jordan Karnofsky | OF | 17 | 6-3 | 230 | L | R | College | | Christian Brothers (Sacramento,CA) | |
| 49 | 1438** | June-Reg | David Horlacher | P | 21 | 6-4 | 175 | R | R | A | | Dixie State College of Utah | |
| 50 | 1464 | June-Reg | Seth Button | OF | 18 | 6-2 | 190 | B | R | Ind | | Elk Lake (Meshoppen,PA) | |