| 1 | 17 | June-Reg | David Murphy | OF | 21 | 6-3 | 195 | L | L | MLB | 2006-2009 | Baylor University | $1,525,000 |
| 1 | 32 | June-Reg | Matt Murton | OF | 21 | 6-1 | 226 | R | R | MLB | 2005-2009 | Georgia Tech | $1,010,000 |
| 2 | 49 | June-Reg | Abe Alvarez | P | 20 | 6-3 | 185 | L | L | MLB | 2004-2006 | Long Beach State University | $700,000 |
| 2 | 54 | June-Reg | Mickey Hall | OF | 18 | 6-0 | 180 | L | L | AAA | | Walton (Marietta,GA) | $800,000 |
| 3 | 84 | June-Reg | Beau Vaughan | P | 22 | 6-4 | 230 | B | R | AAA | | Arizona State University | $250,000 |
| 4 | 114 | June-Reg | Jonathan Papelbon | P | 22 | 6-4 | 220 | R | R | MLB | 2005-2009 | Mississippi State University | $264,500 |
| 5 | 144 | June-Reg | Brian Marshall | P | 20 | 6-5 | 185 | L | L | AA | | Virginia Commonwealth University | $185,000 |
| 6 | 174 | June-Reg | Jessie Corn | P | 20 | 6-1 | 190 | R | R | A- | | Jacksonville State University | $120,000 |
| 7 | 204 | June-Reg | Jeremy West | C | 21 | 6-0 | 200 | R | R | AA | | Arizona State University | $105,000 |
| 8 | 234 | June-Reg | Lee Curtis | 2B | 21 | 5-11 | 185 | R | R | A+ | | College of Charleston | $25,000 |
| 9 | 264 | June-Reg | Jon Wilson | P | 20 | 6-0 | 210 | R | R | A | | Northeastern Junior College | $65,000 |
| 10 | 294 | June-Reg | Chris Durbin | OF | 21 | 6-0 | 180 | R | R | AA | | Baylor University | $31,000 |
| 11 | 324 | June-Reg | Barry Hertzler | P | 22 | 6-2 | 205 | R | R | AAA | | Central Connecticut State University | |
| 12 | 354 | June-Reg | Justin Sturge | P | 22 | 6-4 | 190 | R | L | AA | | Coastal Carolina University | |
| 13 | 384 | June-Reg | Zach Basch | P | 22 | 6-3 | 185 | R | R | A- | | University of Nevada | |
| 14 | 414 | June-Reg | Zach Borowiak | SS | 22 | 6-1 | 185 | R | R | AAA | | Southeast Missouri State University | |
| 15 | 444 | June-Reg | Chris Turner | OF | 19 | 6-0 | 190 | R | R | AA | | Texarkana College | |
| 16 | 474 | June-Reg | Kevin Ool | P | 22 | 5-10 | 180 | L | L | AA | | Marist College | |
| 17 | 504 | June-Reg | William Newton | P | 18 | 6-2 | 170 | L | L | Rookie | | Mountain View (Orem,UT) | |
| 18 | 534 | June-Reg | Robert Cochran | P | 20 | 6-2 | 195 | L | L | AA | | Middle Georgia College | |
| 19 | 564 | June-Reg | Jarrett Gardner | P | 22 | 6-1 | 180 | R | R | AA | | University of Arkansas | |
| 20 | 594** | June-Reg | Josh Morris | OF | 18 | 6-5 | 230 | R | R | A | | Cartersville (Cartersville,GA) | |
| 21 | 624 | June-Reg | Michael Dennison | P | 22 | 6-0 | 200 | R | R | A+ | | Wichita State University | |
| 22 | 654 | June-Reg | Kala Kaaihue | C | 18 | 6-1 | 225 | R | R | AA | | Iolani (Honolulu,HI) | |
| 23 | 684 | June-Reg | David Coffey | OF | 22 | 5-10 | 175 | L | R | A | | University of Georgia | |
| 24 | 714 | June-Reg | Iggy Suarez | SS | 22 | 5-11 | 165 | R | R | AAA | | Texas State University | |
| 25 | 744** | June-Reg | Drew Moffitt | OF | 21 | 6-2 | 210 | R | R | A | | Wichita State University | |
| 26 | 774 | June-Reg | Jason Ramos | SS | 20 | 6-0 | 185 | B | R | AA | | St. Petersburg College | |
| 27 | 804 | June-Reg | Andrew Sharpe | SS | 19 | 6-2 | 185 | R | R | - | | Los Angeles Pierce College | |
| 28 | 834 | June-Reg | Davey Penny | P | 21 | 6-3 | 210 | R | R | A | | East Carolina University | |
| 29 | 864 | June-Reg | Douglas Fink | P | 20 | 6-2 | 220 | R | R | Rookie | | State College of Florida, Manatee-Sarasota | |
| 30 | 894 | June-Reg | David Sanders | P | 21 | 6-4 | 195 | L | L | AAA | 2005-2005 | Wichita State University | |
| 31 | 924** | June-Reg | Greg Schilling | P | 18 | 6-2 | 170 | L | L | - | | Taravella (Coral Springs,FL) | |
| 32 | 954 | June-Reg | Matt Pike | P | 18 | 6-6 | 203 | R | R | - | | Centennial (Pueblo,CO) | |
| 33 | 984 | June-Reg | Scooter Jordan | OF | 22 | 5-8 | 160 | L | R | A | | Texas Tech University | |
| 34 | 1014 | June-Reg | Arthur Santos | P | 21 | 6-0 | 175 | R | R | AA | | Florida International University | |
| 35 | 1044 | June-Reg | Erich Cloninger | C | 22 | 5-11 | 190 | R | R | A | | Liberty University | |
| 36 | 1074 | June-Reg | Ben Sosebee | P | 19 | 6-4 | 180 | R | R | College | | Truett-McConnell College | |
| 37 | 1104** | June-Reg | Chris Johnson | SS | 18 | 6-3 | 220 | R | R | MLB | 2009-2009 | Bishop Verot (Fort Myers,FL) | $0 |
| 38 | 1134 | June-Reg | Michael McBryde | OF | 18 | 6-1 | 194 | R | R | AAA | | Palm Beach Gardens (Palm Beach Gardens,FL) | |
| 39 | 1164** | June-Reg | Jeff Culpepper | OF | 21 | 6-1 | 180 | L | R | A+ | | Gonzaga University | |
| 40 | 1194 | June-Reg | Michael Rutledge | SS | 18 | 6-2 | 195 | R | R | College | | Cullman (Cullman,AL) | |
| 41 | 1224 | June-Reg | Lance Shartz | C | 20 | 6-1 | 205 | R | R | - | | Garden City Community College | |
| 42 | 1253 | June-Reg | Dallas Williams | OF | 18 | 6-1 | 160 | R | R | Rookie | | Pike (Indianapolis,IN) | |
| 43 | 1282** | June-Reg | Scott Thomas | C | 18 | 5-11 | 202 | L | R | AA | | chaminade College Prep School (St. Louis,MO) | |
| 44 | 1310** | June-Reg | Tom Caple | OF | 22 | 6-0 | 185 | R | R | Rookie | | University of San Diego | |
| 45 | 1337 | June-Reg | Terrence Cramer | P | 20 | 6-3 | 235 | R | R | Rookie | | Palm Beach Community College | |
| 46 | 1364 | June-Reg | Victor Rodriguez | C | 17 | 5-7 | 175 | R | R | - | | Cape Coral (Cape Coral,FL) | |
| 47 | 1391 | June-Reg | A.J. Loyd | OF | 19 | 6-1 | 190 | R | R | - | | Bishop Carroll (Wichita,KS) | |
| 48 | 1418 | June-Reg | Adam Davis | P | 19 | 6-3 | 200 | R | R | - | | Middle Georgia College | |
| 49 | 1444 | June-Reg | Jason Smith | P | 18 | 6-3 | 196 | R | R | Rookie | | Bourne (Bourne,MA) | |
| 50 | 1470 | June-Reg | Mitch Stachowsky | C | 18 | 6-3 | 220 | R | R | AAA | | College of Southern Idaho | |