| 1 | 13 | June-Reg | Aaron Hill | SS | 21 | 5-11 | 195 | R | R | MLB | 2005-2009 | Louisiana State University | $1,675,000 |
| 2 | 50 | June-Reg | Josh Banks | P | 20 | 6-3 | 195 | R | R | MLB | 2007-2009 | Florida International University | $650,000 |
| 3 | 80 | June-Reg | Shaun Marcum | P | 21 | 6-0 | 180 | R | R | MLB | 2005-2008 | Missouri State University | $449,000 |
| 4 | 110 | June-Reg | Kurt Isenberg | P | 21 | 6-0 | 185 | R | L | AA | | James Madison University | $299,000 |
| 5 | 140 | June-Reg | Justin James | P | 22 | 6-3 | 215 | R | R | AAA | | University of Missouri | $202,500 |
| 6 | 170 | June-Reg | Christian Snavely | OF | 21 | 6-2 | 200 | L | R | A+ | | Ohio State University | $125,000 |
| 7 | 200 | June-Reg | Danny Core | P | 21 | 6-1 | 195 | R | R | A+ | | Florida Atlantic University | $25,000 |
| 8 | 230 | June-Reg | Chad Mulholland | P | 21 | 6-3 | 205 | R | R | A- | | Missouri State University | $87,500 |
| 9 | 260 | June-Reg | Jamie Vermilyea | P | 21 | 6-4 | 195 | R | R | MLB | 2007-2007 | University of New Mexico | $68,500 |
| 10 | 290 | June-Reg | Jayce Tingler | OF | 22 | 5-8 | 153 | L | L | AA | | University of Missouri | $15,000 |
| 11 | 320 | June-Reg | Tom Mastny | P | 22 | 6-5 | 220 | R | R | MLB | 2006-2008 | Furman University | |
| 12 | 350 | June-Reg | Jayson Rodriguez | P | 20 | 6-0 | 176 | R | R | A- | | Indian River State College | |
| 13 | 380 | June-Reg | Matt Foster | P | 21 | 6-3 | 205 | L | L | Rookie | | Navy | |
| 14 | 410 | June-Reg | Jeremy Harper | P | 22 | 6-2 | 190 | R | R | A+ | | Virginia Military Institute | |
| 15 | 440 | June-Reg | Vito Chiaravalloti | 1B | 22 | 6-3 | 220 | R | R | AA | | University of Richmond | |
| 16 | 470 | June-Reg | Joey Reiman | C | 22 | 6-0 | 200 | R | R | A+ | | Grand Canyon University | |
| 17 | 500 | June-Reg | Jordy Templet | P | 21 | 6-2 | 185 | R | R | AA | | University of Louisiana at Lafayette | |
| 18 | 530 | June-Reg | Ryan Roberts | 3B | 22 | 5-10 | 190 | R | R | MLB | 2006-2009 | University of Texas-Arlington | |
| 19 | 560 | June-Reg | Adrian Martin | P | 18 | 6-2 | 175 | R | R | AAA | | South Fork (Stuart,FL) | |
| 20 | 590** | June-Reg | Brad Depoy | P | 18 | 6-1 | 205 | R | R | College | | The Woodlands (The Woodlands,TX) | |
| 21 | 620 | June-Reg | Mark Sopko | P | 21 | 6-0 | 200 | R | R | A+ | | Arizona State University | |
| 22 | 650 | June-Reg | Vinny Esposito | 3B | 22 | 6-0 | 195 | L | R | A- | | Rutgers University | |
| 23 | 680 | June-Reg | Jermy Acey | 2B | 22 | 5-11 | 180 | B | R | A | | Skyline College | |
| 24 | 710** | June-Reg | Nick Evangelista | P | 21 | 6-3 | 230 | R | R | AA | | University of Pittsburgh | |
| 25 | 740 | June-Reg | Brian Patrick | 2B | 22 | 5-10 | 180 | B | R | AAA | | Duke University | |
| 26 | 770 | June-Reg | Kyle Thousand | OF | 22 | 6-2 | 195 | R | R | College | | University of Iowa | |
| 27 | 800 | June-Reg | Brian Reed | P | 22 | 6-1 | 205 | R | R | AA | | University of Alabama | |
| 28 | 830** | June-Reg | Patrick Breen | OF | 21 | 6-3 | 210 | L | L | AA | | Cal Poly | |
| 29 | 860** | June-Reg | Ben Nieto | P | 19 | 5-11 | 225 | L | L | A | | Riverside Community College | |
| 30 | 890 | June-Reg | Billy Wheeler | P | 22 | 5-11 | 180 | R | R | A- | | South Suburban College | |
| 31 | 920 | June-Reg | Joaquin Canizal | P | 22 | 6-4 | 200 | R | R | A | | Union College | |
| 32 | 950 | June-Reg | Brad Mumma | P | 22 | 6-4 | 255 | L | L | AA | | Western Michigan University | |
| 33 | 980 | June-Reg | Joey Wolfe | C | 22 | 5-9 | 205 | B | R | A | | University of Louisiana-Monroe | |
| 34 | 1010 | June-Reg | Jeremy Noegel | P | 21 | 6-0 | 200 | R | R | College | | University of West Florida | |
| 35 | 1040** | June-Reg | Jim Burt | 1B | 22 | 5-11 | 217 | R | L | A | | University of Miami | |
| 36 | 1070** | June-Reg | Matt Trink | P | 18 | 6-1 | 160 | R | R | College | | Horizon (Scottsdale,AZ) | |
| 37 | 1100** | June-Reg | Aric Van Gaalen | P | 18 | 6-6 | 185 | R | L | Ind | | St. Petersburg College | |
| 38 | 1130 | June-Reg | Jack Ryser | OF | 19 | 6-1 | 180 | R | R | - | | Santa Ana College | |
| 39 | 1160 | June-Reg | William Blackmon | P | 18 | 6-6 | 215 | L | L | College | | Arlington Heights (Fort Worth,TX) | |
| 40 | 1190 | June-Reg | Jimmy Coker | P | 18 | 6-1 | 175 | L | L | - | | Spartanburg Methodist College | |
| 41 | 1220 | June-Reg | Scott Tolbert | P | 21 | 6-3 | 195 | R | R | College | | Georgia Southern University | |
| 42 | 1249 | June-Reg | Jeremy Knicely | C | 22 | 5-11 | 195 | R | R | A | | Longwood University | |
| 43 | 1278 | June-Reg | Ryan Gordon | P | 22 | 5-11 | 180 | L | L | College | | University of North Carolina-Greensboro | |
| 44 | 1306** | June-Reg | Brent Johnson | OF | 21 | 6-2 | 185 | R | R | AAA | | UNLV | |
| 45 | 1333** | June-Reg | Paul Franko | 1B | 19 | 6-0 | 200 | R | R | A+ | | Scottsdale Community College | |
| 46 | 1360 | June-Reg | Paul Marlow | P | 18 | 6-7 | 195 | R | R | - | | Elgin Park (Surrey,BC) | |
| 47 | 1387 | June-Reg | Jeff Walker | P | 19 | 6-3 | 200 | L | L | - | | Vernon College | |
| 48 | 1414 | June-Reg | Bryan Hansen | P | 19 | 6-2 | 215 | L | L | Ind | | Kishwaukee College | |
| 49 | 1440 | June-Reg | Michael Rider | P | 19 | 6-3 | 210 | R | R | Rookie | | Cosumnes River College | |
| 50 | 1466 | June-Reg | Angel Hernandez | OF | 18 | 6-0 | 200 | L | R | - | | Champagnat Catholic (Hialeah,FL) | |