| 1 | 37 | June-Reg | Adam Jones | SS/P | 17 | 6-2 | 185 | R | R | MLB | 2006-2009 | Morse (San Diego,CA) | $925,000 |
| 2 | 56 | June-Reg | Jeff Flaig | 3B | 18 | 6-2 | 180 | R | R | A+ | | El Dorado (Placentia,CA) | $710,000 |
| 3 | 86 | June-Reg | Ryan Feierabend | P | 17 | 6-4 | 200 | L | L | MLB | 2006-2008 | Midview (Grafton,OH) | $437,500 |
| 4 | 116 | June-Reg | Paul Fagan | P | 18 | 6-5 | 195 | L | L | A+ | | Bartram Trail (Jacksonville,FL) | $300,000 |
| 5 | 146 | June-Reg | Casey Abrams | P | 21 | 6-4 | 190 | L | L | A | | Wright State University | $182,500 |
| 6 | 176 | June-Reg | Eric O'Flaherty | P | 18 | 6-2 | 195 | L | L | MLB | 2006-2009 | Walla Walla (Walla Walla,WA) | $155,000 |
| 7 | 206 | June-Reg | Jeremy Dutton | 3B | 22 | 5-11 | 195 | L | R | A | | North Carolina State University | $7,500 |
| 8 | 236 | June-Reg | Tom Oldham | P | 21 | 6-2 | 208 | L | L | AAA | | Creighton University | $90,000 |
| 9 | 266 | June-Reg | Justin Ruchti | C | 22 | 6-2 | 200 | R | R | AA | | Rice University | $6,500 |
| 10 | 296 | June-Reg | Mike Cox | 3B | 22 | 6-1 | 185 | R | R | AA | | Florida Atlantic University | $5,000 |
| 11 | 326 | June-Reg | Joe Woerman | P | 20 | 6-3 | 200 | R | R | AAA | | San Diego City College | |
| 12 | 356 | June-Reg | Buddy Flores | P | 19 | 6-4 | 165 | R | R | A+ | | University of Texas-El Paso | |
| 13 | 386 | June-Reg | Shawn Nottingham | P | 18 | 6-0 | 180 | L | L | AAA | | Jackson (Jackson,OH) | |
| 14 | 416 | June-Reg | Tim Dorn | P | 20 | 6-8 | 245 | R | R | A | | East Los Angeles College | |
| 15 | 446 | June-Reg | Scott Maine | P | 18 | 6-3 | 195 | L | L | AAA | | Dwyer (West Palm Beach,FL) | |
| 16 | 476 | June-Reg | Brian Schweiger | C | 20 | 6-0 | 200 | R | R | AAA | | Cal State San Bernardino | |
| 17 | 506 | June-Reg | Jason Snyder | P | 20 | 6-5 | 185 | R | R | AAA | | Dixie State College of Utah | |
| 18 | 536 | June-Reg | James Hymon | SS | 23 | 6-0 | 170 | R | R | Ind | | Rust College | |
| 19 | 566 | June-Reg | Aaron Jensen | P | 19 | 6-2 | 195 | R | R | A+ | | Springville (Springville,UT) | |
| 20 | 596 | June-Reg | C.J. Gaddis | OF | 17 | 6-1 | 210 | R | R | College | | Hoke County (Raeford,NC) | |
| 21 | 626 | June-Reg | Casey Craig | OF | 18 | 5-10 | 185 | L | R | AA | | Granite Hills (El Cajon,CA) | |
| 22 | 656 | June-Reg | Sam Bradford | OF | | | | | | AAA | | Gardner-Webb University | |
| 23 | 686 | June-Reg | Danny Santin | C | 18 | 6-3 | 190 | L | R | AAA | | Brito (Miami,FL) | |
| 24 | 716 | June-Reg | Kenneth Falconer | P | 20 | 6-6 | 205 | L | R | A- | | University of Kansas | |
| 25 | 746 | June-Reg | Jason Cable | P | 17 | 6-0 | 160 | L | L | - | | Palmdale (Palmdale,CA) | |
| 26 | 776** | June-Reg | Dwayne Lynah | OF | 19 | 6-2 | 170 | R | L | - | | Spartanburg Methodist College | |
| 27 | 806 | June-Reg | Richard Breshears | P | 19 | 6-4 | 180 | L | L | Rookie | | Hutchinson Community College | |
| 28 | 836 | June-Reg | Daniel McDonald | P | 18 | 6-3 | 215 | L | L | College | | Theodore (Theodore,AL) | |
| 29 | 866 | June-Reg | Chris Garcia | P | 18 | 6-1 | 205 | R | R | - | | | |
| 30 | 896** | June-Reg | Steve Santos | P | 18 | 6-2 | 200 | R | R | - | | Los Medanos College | |
| 31 | 926** | June-Reg | Doug Mathis | P | 20 | 6-2 | 218 | R | R | MLB | 2008-2009 | Central Arizona College | |
| 32 | 956 | June-Reg | Adam Poole | P | 20 | 6-3 | 180 | L | L | College | | Lincoln Trail College | |
| 33 | 986 | June-Reg | Blake Rampy | P | 18 | 6-1 | 185 | R | R | College | | Tomball (Tomball,TX) | |
| 34 | 1016 | June-Reg | Paul Keck | C | 19 | 6-3 | 205 | R | R | Rookie | | Sacramento City College | |
| 35 | 1046** | June-Reg | Andy Reichard | P | 18 | 6-4 | 235 | R | R | A | | State College Area (State College,PA) | |
| 36 | 1076 | June-Reg | Alex Baboulas | P | 17 | 6-2 | 190 | L | L | College | | Birchmount Park (Scarborough,ON) | |
| 37 | 1106 | June-Reg | Joel Allin | P | 18 | 6-1 | 185 | L | L | - | | Stockbridge (Stockbridge,GA) | |
| 38 | 1136** | June-Reg | Yusuf Carter | C | 18 | 6-3 | 197 | B | R | A+ | | Canarsie (Brooklyn,NY) | |
| 39 | 1166 | June-Reg | Trevor Heid | OF | 21 | 6-3 | 210 | R | R | A+ | | Dixie State College of Utah | |
| 40 | 1196 | June-Reg | Mark Tournangeau | P | 19 | 6-5 | 200 | L | R | College | | Queen Elizabeth Park (Oakville,ON) | |
| 41 | 1226 | June-Reg | Dane Awana | P | 19 | 6-0 | 170 | L | L | - | | Saddleback College | |
| 42 | 1255** | June-Reg | Danny Santiesteban | OF | 18 | 6-2 | 170 | R | R | A+ | | Brito (Miami,FL) | |
| 43 | 1284 | June-Reg | Harold Williams | P | 18 | 6-3 | 180 | L | L | A+ | | Cerritos College | |
| 44 | 1312 | June-Reg | Edwin Totesault | SS | 20 | 5-11 | 165 | L | R | - | | Brito (Miami,FL) | |
| 45 | 1339 | June-Reg | McCay Green | P | 19 | 6-3 | 190 | R | R | - | | Lake Sumter Community College | |
| 46 | 1366** | June-Reg | Mike Hofius | 1B | 21 | 6-2 | 210 | L | L | A | | Long Beach State University | |
| 47 | 1393 | June-Reg | Dan Kapala | P | 17 | 6-4 | 215 | R | R | A | | Shrine Catholic School (Royal Oak,MI) | |
| 48 | 1420 | June-Reg | Markus Roberts | SS | 17 | 5-8 | 160 | B | R | - | | Deer Valley (Antioch,CA) | |
| 49 | 1446 | June-Reg | Jose Laffitte | OF | 18 | 5-11 | 170 | R | R | - | | Miami Senior (Miami,FL) | |
| 50 | 1472 | June-Reg | Tim Turner | OF | 21 | 6-2 | 175 | L | L | A+ | | East Tennessee State University | |