| 1 | 12 | June-Reg | Lastings Milledge | OF | 18 | 6-1 | 180 | R | R | MLB | 2006-2009 | Lakewood Ranch (Bradenton,FL) | $2,075,000 |
| 4 | 109 | June-Reg | Shane Hawk | P | 21 | 6-4 | 180 | R | L | A+ | | Oklahoma State University | $305,000 |
| 5 | 139 | June-Reg | Corey Coles | OF | 21 | 6-0 | 180 | L | L | AAA | | University of Louisiana at Lafayette | $195,500 |
| 6 | 169 | June-Reg | Mateo Miramontes | P | 21 | 6-4 | 200 | R | R | A | | University of Nevada | $145,000 |
| 7 | 199 | June-Reg | Brian Bannister | P | 22 | 6-1 | 207 | R | R | MLB | 2006-2009 | USC | $95,000 |
| 8 | 229 | June-Reg | Seth Pietsch | OF | 21 | 5-9 | 195 | R | R | A | | Oregon State University | $80,000 |
| 9 | 259 | June-Reg | Vincent Cordova | P | 21 | 6-3 | 210 | R | R | AA | | Loyola Marymount University | $77,500 |
| 10 | 289 | June-Reg | David Reaver | SS | 22 | 5-11 | 185 | R | R | A+ | | University of Richmond | $7,500 |
| 11 | 319 | June-Reg | Andy Sides | P | 18 | 6-7 | 210 | L | R | Rookie | | De Soto (De Soto,MO) | |
| 12 | 349 | June-Reg | Tony Piazza | C | 23 | 6-2 | 215 | R | R | AAA | | Missouri State University | |
| 13 | 379 | June-Reg | Carlos Muniz | P | 22 | 6-0 | 180 | R | R | MLB | 2007-2008 | Long Beach State University | |
| 14 | 409 | June-Reg | Charles Bennett | C | 21 | 6-2 | 200 | L | R | A | | Armstrong Atlantic State University | |
| 15 | 439** | June-Reg | Harold Mozingo | P | 18 | 6-1 | 175 | R | R | A | | Essex (Tappahannock,VA) | |
| 16 | 469 | June-Reg | David Smith | P | 21 | 6-2 | 185 | L | L | A- | | Pfeiffer University | |
| 17 | 499 | June-Reg | Ryan Meyers | P | 17 | 6-5 | 195 | L | R | A+ | | Round Valley (Eagar,AZ) | |
| 18 | 529** | June-Reg | Kyle McCulloch | P | 18 | 6-2 | 170 | R | R | AA | | Bellaire (Bellaire,TX) | |
| 19 | 559 | June-Reg | Ryan Harvey | OF | 23 | 6-0 | 190 | R | R | A+ | | University of California-Riverside | |
| 20 | 589 | June-Reg | Trip Mealor | P | 18 | 6-4 | 240 | R | R | - | | Oconee County (Watkinsville,GA) | |
| 21 | 619 | June-Reg | Travis Garcia | SS | 21 | 6-3 | 215 | R | R | AA | | Iona College | |
| 22 | 649 | June-Reg | Greg Ramirez | P | 22 | 6-4 | 205 | R | R | A+ | | Pepperdine University | |
| 23 | 679 | June-Reg | Dante Brinkley | OF | 21 | 5-10 | 170 | R | R | AAA | | Missouri State University | |
| 24 | 709 | June-Reg | Troy Fry | P | 22 | 6-5 | 220 | R | R | Ind | | Berry College | |
| 25 | 739 | June-Reg | Evan Maclane | P | 20 | 6-2 | 170 | L | L | AAA | | Feather River College | |
| 26 | 769 | June-Reg | Kevin Rios | SS | 21 | 6-1 | 180 | R | R | AA | | Concordia University | |
| 27 | 799** | June-Reg | Deunte Heath | P | 17 | 6-4 | 205 | R | R | AAA | | Newton (Covington,GA) | |
| 28 | 829 | June-Reg | Cory Wells | OF | 18 | 6-0 | 185 | R | R | Rookie | | Plant City (Plant City,FL) | |
| 29 | 859 | June-Reg | Justin Valdes | P | 17 | 6-1 | 160 | R | R | College | | Dunedin (Dunedin,FL) | |
| 30 | 889 | June-Reg | Adam Carr | P | 19 | 6-2 | 210 | R | R | AA | | West Valley College | |
| 31 | 919 | June-Reg | Jordan Newton | C | 17 | 5-10 | 185 | R | R | A+ | | Larue County (Hodgenville,KY) | |
| 32 | 949 | June-Reg | Humberto Gonzalez | SS | 22 | 5-9 | 166 | R | R | A- | | Feather River College | |
| 33 | 979 | June-Reg | Abel Newton | P | 18 | 6-1 | 225 | R | R | College | | University of Arkansas-Fort Smith | |
| 34 | 1009 | June-Reg | Drew Johnson | P | 18 | 6-3 | 205 | R | R | - | | Wylie (Wylie,TX) | |
| 35 | 1039 | June-Reg | Patrick Howe | P | 18 | 6-3 | 195 | L | L | Ind | | Faith Baptist (Longmont,CO) | |
| 36 | 1069 | June-Reg | Jim Wallace | C | 22 | 6-3 | 220 | R | R | Ind | | Santa Clara University | |
| 37 | 1099 | June-Reg | Alex Turner | OF | 19 | 6-2 | 198 | R | R | Rookie | | Catonsville Community College | |
| 38 | 1129 | June-Reg | Simon Gagnon | P | 18 | 6-0 | 175 | L | L | - | | Montmorency College | |
| 39 | 1159 | June-Reg | Garrett Young | 3B | 18 | 6-3 | 225 | R | R | College | | Edison (Huntington Beach,CA) | |
| 40 | 1189 | June-Reg | Dan Fischer | P | 20 | | | R | R | - | | Los Angeles Pierce College | |
| 41 | 1219 | June-Reg | Mike Bartley | P | 19 | 6-5 | 215 | R | R | - | | Alleghany County (Covington,VA) | |
| 42 | 1248 | June-Reg | Brian Baugher | P | 17 | 6-3 | 210 | R | R | - | | Brunswick (Frederick,MD) | |
| 43 | 1277 | June-Reg | Mike Chambless | C | 18 | 6-3 | 190 | R | R | - | | Round Rock (Round Rock,TX) | |
| 44 | 1305 | June-Reg | Tom Sgueglia | 3B | 19 | 6-2 | 205 | R | R | Rookie | | Rockland Community College | |
| 45 | 1332 | June-Reg | Jean-Michel Rochon-Salvas | P | 18 | 6-0 | 175 | R | R | Ind | | Edouard Montpetit (Montreal,QC) | |
| 46 | 1359 | June-Reg | Joel Thorney | P | 17 | 6-4 | 180 | R | R | College | | Leaside (Toronto,ON) | |
| 47 | 1386 | June-Reg | David Torres | P | 22 | 6-1 | 205 | R | R | A- | | University of Central Florida | |
| 48 | 1413 | June-Reg | Jon Malo | SS | 19 | 6-0 | 180 | R | R | AAA | | Miami-Dade College | $125,000 |
| 49 | 1439 | June-Reg | Grover Benton | OF | 21 | 5-9 | 185 | R | R | College | | Webber International University | |
| 50 | 1465 | June-Reg | Lester Aragon | C | 18 | 5-10 | 185 | L | R | - | | Brito (Miami,FL) | |