| 1 | 2 | June-Reg | Rickie Weeks | 2B | 20 | 6-0 | 195 | R | R | MLB | 2003-2009 | Southern University | $3,600,000 |
| 2 | 39 | June-Reg | Anthony Gwynn | OF | 20 | 6-0 | 185 | L | R | MLB | 2006-2009 | San Diego State University | $875,000 |
| 3 | 69 | June-Reg | Lou Palmisano | C | 20 | 6-1 | 185 | R | R | AA | | Broward College | $500,000 |
| 4 | 99 | June-Reg | Charlie Fermaint | OF | 17 | 5-10 | 170 | R | R | AA | | Jose S Alegria (Jose S Alegria,Vega Alta,PR) | $295,000 |
| 5 | 129 | June-Reg | Bryan Opdyke | C | 18 | 6-2 | 190 | L | R | Rookie | | Catalina Foothills (Tucson,AZ) | $228,500 |
| 6 | 159 | June-Reg | Robbie Wooley | P | 18 | 6-1 | 190 | R | R | A | | Taylor (Kokomo,IN) | $175,000 |
| 7 | 189 | June-Reg | Brian Montalbo | P | 21 | 6-4 | 210 | B | R | A | | University of California | $127,500 |
| 8 | 219 | June-Reg | Ryan Marion | P | 18 | 6-1 | 200 | R | R | A | | Glenn (Kernersville,NC) | $104,000 |
| 9 | 249 | June-Reg | Greg Kloosterman | P | 21 | 6-3 | 205 | L | L | A | | Bethel (Bethel,IN) | $85,000 |
| 10 | 279 | June-Reg | Tyler Morrison | P | 18 | 6-0 | 200 | R | R | Rookie | | Glendora (Glendora,CA) | $62,500 |
| 11 | 309 | June-Reg | Adam Heether | 3B | 21 | 6-0 | 200 | R | R | AAA | | Long Beach State University | |
| 12 | 339 | June-Reg | Carlos Corporan | 1B | 19 | 6-3 | 210 | B | R | MLB | 2009-2009 | Lake City Community College | |
| 13 | 369** | June-Reg | Luke Cannon | OF | 18 | 6-0 | 200 | L | L | A- | | | |
| 14 | 399 | June-Reg | Garrett Bussiere | C | 17 | 6-3 | 178 | R | R | Rookie | | Northglenn (Northglenn,CO) | |
| 15 | 429 | June-Reg | Joel Rivera | OF | 17 | 6-1 | 165 | R | R | Rookie | | Hoboken (Hoboken,NJ) | |
| 16 | 459 | June-Reg | Mitch Stetter | P | 22 | 6-4 | 195 | L | L | MLB | 2007-2009 | Indiana State University | |
| 17 | 489 | June-Reg | Tommy Hawk | P | 18 | 6-2 | 215 | R | R | A | | Cabrillo (Lompoc,CA) | |
| 18 | 519 | June-Reg | Oscar Montes | P | 18 | 6-3 | 220 | R | R | Rookie | | Flanagan (Pembroke Pines,FL) | |
| 19 | 549 | June-Reg | Ty Taubenheim | P | 20 | 6-5 | 235 | R | R | MLB | 2006-2008 | Edmonds Community College | |
| 20 | 579 | June-Reg | Nick Slack | P | 20 | 6-1 | 215 | R | R | A+ | | Lake City Community College | |
| 21 | 609 | June-Reg | Taylor Meier | P | 18 | 6-6 | 205 | R | R | College | | Orangewood Christian (Maitland,FL) | |
| 22 | 639 | June-Reg | Terry Trofholz | OF | 22 | 6-2 | 190 | R | R | A | | Texas Christian University | |
| 23 | 669** | June-Reg | Jon Mungle | OF | 21 | 6-1 | 217 | L | R | Ind | | Mississippi State University | |
| 24 | 699 | June-Reg | Drew Anderson | OF | 22 | 6-2 | 205 | L | R | MLB | 2006-2006 | University of Nebraska | |
| 25 | 729 | June-Reg | Jared Theodorakos | P | 22 | 6-3 | 240 | L | L | Rookie | | Baylor University | |
| 26 | 759 | June-Reg | Hasan Rasheed | OF | 19 | 5-8 | 175 | L | L | A+ | | Lake City Community College | |
| 27 | 789 | June-Reg | Daniel McKenna | P | 22 | 6-4 | 205 | R | R | A | | Rutgers University-Camden | |
| 28 | 819 | June-Reg | Kenny Durost | P | 21 | 6-4 | 188 | R | R | A+ | | Lubbock Christian University | |
| 29 | 849 | June-Reg | Ricky Stover | P | 21 | 6-6 | 205 | L | L | Ind | | University of Texas-Arlington | |
| 30 | 879 | June-Reg | Robby Deevers | OF | 23 | 6-0 | 205 | R | R | A+ | | University of Texas-Arlington | |
| 31 | 909** | June-Reg | Sheldon Catchot | P | 18 | 6-0 | 175 | L | L | Ind | | North Shore (Slidell,LA) | |
| 32 | 939 | June-Reg | Will Lewis | 2B | 21 | 5-10 | 180 | R | R | A | | Texas Christian University | |
| 33 | 969 | June-Reg | Chad Miller | 1B | 18 | 6-2 | 225 | R | R | Ind | | Mesquite (Gilbert,AZ) | |
| 34 | 999 | June-Reg | Dan Grybash | P | 22 | 6-1 | 205 | R | R | A+ | | Carthage College | |
| 35 | 1029 | June-Reg | Phillip Hendrix | P | 22 | 6-0 | 170 | R | R | Ind | | Virginia Military Institute | |
| 36 | 1059 | June-Reg | Joe Ayers | SS | 18 | 6-0 | 188 | R | R | A- | | Juneau Douglas (Juneau,AK) | |
| 37 | 1089 | June-Reg | Justin Wilson | P | 21 | 6-2 | 195 | L | L | Rookie | | Chandler-Gilbert Community College | |
| 38 | 1119 | June-Reg | Brent Weaver | P | 18 | 6-1 | 175 | R | R | Rookie | | Midwest City (Midwest City,OK) | |
| 39 | 1149 | June-Reg | Wes Yeary | P | 18 | 6-1 | 185 | R | R | - | | Leon (Tallahassee,FL) | |
| 40 | 1179 | June-Reg | Robert Hinton | P | 18 | 6-2 | 180 | R | R | AAA | | Riverview (Sarasota,FL) | |
| 41 | 1209 | June-Reg | Evan Baubles | C | 19 | 6-0 | 185 | R | R | - | | Wall (Wall Township,NJ) | |
| 42 | 1238 | June-Reg | Zach Kohan | SS | 18 | 5-11 | 180 | R | R | - | | Juneau Douglas (Juneau,AK) | |
| 43 | 1267** | June-Reg | Daryl Maday | P | 17 | 6-2 | 225 | R | R | AA | | Westocha Central (Bristol,WI) | |
| 44 | 1295 | June-Reg | Raynel Robles-Encarnacion | 2B | 18 | 6-1 | 190 | R | R | - | | Florida Air Academy (Florida Air Academy,Santo Domingo,D.R.) | |
| 45 | 1323 | June-Reg | Tim Grubbs | P | 18 | 6-4 | 175 | R | R | - | | Lake City Community College | |
| 46 | 1350 | June-Reg | Clay Blevins | C | 20 | 6-1 | 190 | L | R | A+ | | Cowley College | |
| 47 | 1377 | June-Reg | Ryan Zink | P | 18 | 6-4 | 210 | R | R | A+ | | Lafollette (Madison,WI) | |
| 48 | 1404 | June-Reg | Calvin Thompson | OF | 18 | 6-2 | 190 | R | R | - | | Shaw (East Cleveland,OH) | |
| 49 | 1430 | June-Reg | Justin Sarka | P | 18 | 6-4 | 208 | R | R | - | | Englewood (Jacksonville,FL) | |
| 50 | 1456 | June-Reg | Luis Pardo | P | 17 | 6-5 | 230 | R | R | A | | Westminster Christian (Miami,FL) | |