| 1 | 13 | June-Reg | Khalil Greene | SS | 22 | 5-11 | 210 | R | R | MLB | 2003-2009 | Clemson University | $1,500,000 |
| 2 | 54 | June-Reg | Michael Johnson | 1B | 22 | 6-3 | 215 | L | R | AAA | | Clemson University | |
| 3 | 85 | June-Reg | Kennard Jones | OF | 20 | 6-0 | 175 | L | L | AAA | | Indiana University | |
| 4 | 115 | June-Reg | Aaron Coonrod | P | 22 | 6-4 | 215 | R | R | A+ | | John A. Logan College | |
| 5 | 145 | June-Reg | Sean Thompson | P | 19 | 5-11 | 160 | L | L | AAA | | Thunder Ridge (Littleton,CO) | |
| 6 | 175 | June-Reg | Adam Shorsher | C | 21 | 6-2 | 200 | R | R | A | | San Jose State University | |
| 7 | 205** | June-Reg | Matt Lynch | P | 21 | 6-1 | 185 | L | L | AA | | Florida State University | |
| 8 | 235 | June-Reg | Luke Steidlmayer | P | 21 | 6-5 | 190 | R | R | AAA | | University of California-Davis | |
| 9 | 265 | June-Reg | Brian Burgamy | 2B | 21 | 5-10 | 190 | B | R | AA | | Wichita State University | |
| 10 | 295 | June-Reg | L.J. Biernbaum | OF | 22 | 6-3 | 200 | L | L | A | | Florida Atlantic University | |
| 11 | 325 | June-Reg | Brandon Wilson | P | 19 | 6-1 | 180 | R | R | Rookie | | Northwest Florida State College | |
| 12 | 355 | June-Reg | Paul McAnulty | 1B | 21 | 5-10 | 220 | L | R | MLB | 2005-2008 | Long Beach State University | |
| 13 | 385** | June-Reg | Lance Pendleton | H | 18 | 6-3 | 195 | L | R | AA | | Kingwood (Kingwood,TX) | |
| 14 | 415 | June-Reg | Gabe Ribas | P | 23 | 6-4 | 210 | R | R | AA | | Northwestern University | |
| 15 | 445 | June-Reg | Rolando Agosto | SS | 21 | 6-2 | 200 | R | R | A | | Union U (PR) | |
| 16 | 475 | June-Reg | Kevin Beavers | P | 22 | 6-5 | 190 | L | L | A+ | | Pepperdine University | |
| 17 | 505 | June-Reg | Rashad Smith | OF | 22 | 6-4 | 200 | L | R | A | | Lambuth University | |
| 18 | 535 | June-Reg | Michael Gallaway | P | | | 0 | | | - | | Grayson County College | |
| 19 | 565** | June-Reg | John Grogan | P | | 6-4 | 220 | L | L | A+ | | Northwest Florida State College | |
| 20 | 595 | June-Reg | George Kottaras | C | 19 | 6-0 | 180 | L | R | MLB | 2008-2009 | Connors State College | $375,000 |
| 21 | 625** | June-Reg | Andy LaRoche | SS | 18 | 6-1 | 225 | R | R | MLB | 2007-2009 | Grayson County College | |
| 22 | 655 | June-Reg | David Krisch | P | 22 | 6-7 | 200 | L | L | Rookie | | Cal Poly | |
| 23 | 685 | June-Reg | Rusty Moore | OF | 21 | 6-2 | 210 | R | R | A- | | Bethune-Cookman University | |
| 24 | 715 | June-Reg | Adam Montarbo | P | 21 | 6-4 | 220 | R | R | A- | | Chico State | |
| 25 | 745** | June-Reg | Chuck Bechtel | P | 22 | 6-4 | 215 | R | R | A+ | | Marist College | |
| 26 | 775 | June-Reg | E.J. Laratta | P | 22 | 6-2 | 190 | R | R | A- | | Ohio State University | |
| 27 | 805 | June-Reg | Brian Whitaker | P | 22 | 6-4 | 200 | R | R | AAA | | University of North Carolina | |
| 28 | 835 | June-Reg | Mike Richardson | OF | 22 | 5-10 | 215 | R | R | AAA | | Sonoma State University | |
| 29 | 865 | June-Reg | Steve Baker | OF | 22 | 6-3 | 200 | R | R | AA | | Liberty University | |
| 30 | 895 | June-Reg | Danny De la O | P | 18 | 6-0 | 185 | L | L | A | | Freed-Hardeman University | |
| 31 | 925 | June-Reg | Jared Wells | P | 20 | 6-4 | 200 | R | R | MLB | 2008-2008 | Tyler Junior College | |
| 32 | 955 | June-Reg | Jesse Estrada | P | 18 | 6-8 | 280 | R | R | AAA | | Socorro (El Paso,TX) | |
| 33 | 985** | June-Reg | Bo Banach | 3B | 19 | 6-1 | 200 | R | R | Ind | | Lakewood (Lakewood,CA) | |
| 34 | 1015 | June-Reg | Billy Silvestri | P | 20 | 5-11 | 175 | R | R | - | | Dixie State College of Utah | |
| 35 | 1045 | June-Reg | Drew Macias | CF | 19 | 6-3 | 175 | L | L | MLB | 2007-2009 | Chaffey College | |
| 36 | 1075 | June-Reg | Greg Bochy | P | 22 | 6-2 | 200 | R | R | A | | Cal Poly | |
| 37 | 1105 | June-Reg | Corey Hall | P | | | 0 | | | - | | Seminole Community College | |
| 38 | 1135 | June-Reg | Brendan Katin | C | 19 | 6-1 | 235 | R | R | AAA | | Northwest Florida State College | |
| 39 | 1165 | June-Reg | Scott Lonergan | P | 18 | 6-5 | 215 | R | R | AAA | | Poway (Poway,CA) | |
| 40 | 1195 | June-Reg | Daniel Fitch | C | 18 | 6-2 | 190 | R | R | College | | Mount Carmel (San Diego,CA) | |
| 41 | 1225 | June-Reg | Ryan Werner | C | | | 0 | | | - | | San Diego Community College | |
| 42 | 1255 | June-Reg | Brian Wahlbrink | | 22 | 6-3 | 200 | R | R | A | | University of California-Riverside | |
| 43 | 1284 | June-Reg | Jason Catala | RF | | | 0 | | | - | | Margarita Janer (San Juan,PR) | |
| 44 | 1312** | June-Reg | Marcus Barriger | P | 19 | 6-1 | 215 | R | R | A- | | Kaskaskia College | |
| 45 | 1339 | June-Reg | Chad Etheridge | LF | 19 | 6-0 | 205 | B | R | Ind | | Columbia State Community College | |
| 46 | 1366 | June-Reg | Craig Bartosh | | 19 | 6-4 | 215 | R | R | College | | Grayson County College | |
| 47 | 1392 | June-Reg | Stephen Nam | 1B-2B | | | 0 | | | - | | Iona (Mississauga,ON) | |
| 48 | 1418** | June-Reg | Matt Morizio | | 18 | 6-3 | 215 | L | R | A+ | | Waltham (Waltham,MA) | |
| 49 | 1444 | June-Reg | John Parscal | | 18 | 6-1 | 205 | L | L | College | | Northglenn (Northglenn,CO) | |
| 50 | 1468 | June-Reg | Christopher Regan | 1B-LF | 19 | 6-2 | 210 | L | R | Rookie | | Wooster (Reno,NV) | |