| 2 | 48 | June-Reg | Kelly Shoppach | C | 21 | 6-0 | 215 | R | R | MLB | 2005-2009 | Baylor University | $825,000 |
| 2 | 61** | June-Reg | Matt Chico | P | 18 | 5-11 | 190 | L | L | MLB | 2007-2008 | Fallbrook (Fallbrook,CA) | $0 |
| 3 | 93 | June-Reg | Jon Devries | C | 18 | 6-3 | 200 | R | R | AA | | Irvine (Irvine,CA) | $459,500 |
| 4 | 123 | June-Reg | Stefan Bailie | IF | 21 | 6-0 | 215 | R | R | AA | | Washington State University | $230,000 |
| 5 | 153 | June-Reg | Eric West | IF | 18 | 6-1 | 160 | R | R | A | | Southside (Gadsden,AL) | $200,000 |
| 6 | 183** | June-Reg | Justin James | P | 20 | 6-3 | 215 | R | R | AAA | | Yukon (Yukon,OK) | |
| 7 | 213 | June-Reg | Rolando Viera | P | 27 | 5-10 | 182 | L | L | AAA | | | $175,000 |
| 8 | 243 | June-Reg | Kevin Youkilis | IF | 22 | 6-1 | 220 | R | R | MLB | 2004-2009 | University of Cincinnati | $12,000 |
| 9 | 273 | June-Reg | Billy Simon | P | 18 | 6-6 | 220 | R | R | A | | Wellington Christian (Wellington,FL) | $325,000 |
| 10 | 303** | June-Reg | Ben Crockett | P | 21 | 6-3 | 200 | R | R | AAA | | Harvard University | |
| 11 | 333 | June-Reg | Shane Rhodes | P | 21 | 6-2 | 200 | L | L | A+ | | West Virginia University | |
| 12 | 363 | June-Reg | Ryan Brunner | OF | 22 | 6-0 | 220 | L | L | A | | University of Northern Iowa | |
| 13 | 393 | June-Reg | Alec Porzel | SS | 22 | 5-11 | 190 | R | R | A- | | University of Notre Dame | |
| 14 | 423 | June-Reg | Chris Farley | P | 18 | 6-2 | 180 | R | R | AAA | | Marhar Regional (Orange,MA) | |
| 15 | 453 | June-Reg | Ryan Carroll | P | 22 | 6-6 | 220 | R | R | Ind | | Mississippi State University | |
| 16 | 483 | June-Reg | Antonio Gonzalez | CF | 18 | 6-0 | 180 | R | R | - | | Framingham (Framingham,MA) | |
| 17 | 513 | June-Reg | Michael Grant | P | 21 | 6-1 | 190 | R | R | A- | | Danville Area Community College | |
| 18 | 543 | June-Reg | Brian Lane | P | 20 | 6-3 | 220 | R | R | A- | | University of Richmond | |
| 19 | 573** | June-Reg | Jeremy Brown | C | 21 | 5-10 | 210 | R | R | MLB | 2006-2006 | University of Alabama | |
| 20 | 603 | June-Reg | Devoris Williams | OF | 17 | 5-10 | 180 | B | R | A- | | Greensboro (Greensboro,AL) | |
| 21 | 633 | June-Reg | Charlie Weatherby | P | 22 | 6-0 | 200 | R | R | AAA | | University of North Carolina at Wilmington | |
| 22 | 663 | June-Reg | Jed Rogers | P | 22 | 6-2 | 205 | R | R | A- | | Boston College | |
| 23 | 693 | June-Reg | Pedro Suarez | P | 17 | 6-3 | 190 | R | R | Rookie | | Mount Miguel (Spring Valley,CA) | |
| 24 | 723** | June-Reg | Jason Ramos | SS | 18 | 6-0 | 185 | B | R | AA | | Braddock (Miami,FL) | |
| 25 | 753 | June-Reg | Kris Coffey | OF | 22 | 5-9 | 175 | R | R | A | | Dallas Baptist University | |
| 26 | 783 | June-Reg | Kenneth Trapp | P | | | 0 | | | Ind | | Dallas Baptist University | |
| 27 | 813 | June-Reg | Bryan Kent | 3B | 23 | 6-0 | 190 | R | R | A | | Texas State University | |
| 28 | 843** | June-Reg | Steven Ponder | P | 21 | 6-0 | 200 | B | L | A- | | Texas A&M University | |
| 29 | 873 | June-Reg | Mario Campos | OF | 22 | 6-6 | 235 | R | R | A- | | Trevecca Nazarene University | |
| 30 | 903 | June-Reg | Richard Sander | P | 20 | 6-2 | 235 | R | R | A- | | Cal State San Bernardino | |
| 31 | 933 | June-Reg | Brett Rudrude | P | 22 | 6-3 | 195 | R | R | AA | | Cal State San Bernardino | |
| 32 | 963 | June-Reg | Kyle Jackson | P | 18 | 6-3 | 180 | R | R | AA | | | |
| 33 | 993 | June-Reg | Chris Honsa | P | 17 | 6-3 | 185 | R | R | A+ | | Corona del Sol (Tempe,AZ) | |
| 34 | 1023 | June-Reg | Eron Brown | 3B | 18 | 6-3 | 190 | R | R | - | | Auburn (Auburn,AL) | |
| 35 | 1053** | June-Reg | Koley Kolberg | P | 18 | 6-1 | 176 | R | R | A | | Coppell (Coppell,TX) | |
| 36 | 1083 | June-Reg | Adam Sabari | 1B | | | 0 | | | - | | | |
| 37 | 1113 | June-Reg | Emmanuel Lopez | 1B | 18 | 6-3 | 205 | R | R | - | | Globe (Globe,AZ) | |
| 38 | 1143 | June-Reg | Jacob Almestica | P | 19 | 6-4 | 160 | R | R | - | | Medardo Carazo (Trujillo Alto,PR) | |
| 39 | 1173 | June-Reg | Ricky Bauer | | 18 | 6-2 | 194 | R | R | A- | | Mid-Pacific Institute (Honolulu,HI) | |
| 40 | 1203** | June-Reg | Josh Bolen | OF | 21 | 6-3 | 225 | R | R | A- | | Illinois Central College | |
| 41 | 1232** | June-Reg | Bart Braun | P | 19 | 5-10 | 175 | L | L | Ind | | Napa Valley College | |
| 42 | 1260 | June-Reg | Tommie Major | | 18 | 6-0 | 190 | R | R | College | | Briarcliffe College | |
| 43 | 1288** | June-Reg | Tanner Wootan | 2B | 18 | 6-1 | 190 | B | R | A- | | Mountain View (Mesa,AZ) | |
| 44 | 1316 | June-Reg | Terrence Taylor | | | | | | | College | | College of Marin | |
| 45 | 1344 | June-Reg | Brent Tarbett | OF | 20 | 6-2 | 220 | R | R | A+ | | College of Southern Nevada | |
| 46 | 1372 | June-Reg | Chris Keeran | CF | 18 | | 0 | | | - | | Eastlake (Chula Vista,CA) | |
| 47 | 1399 | June-Reg | Donald Benson | OF | 20 | 5-11 | 195 | R | R | A- | | Mount San Antonio College | |