| 1 | 36 | June-Reg | Michael Garciaparra | SS | 18 | 6-1 | 160 | R | R | AAA | | Don Bosco (La Habra Heights,CA) | $1,050,000 |
| 2 | 49 | June-Reg | Rene Rivera | C | 17 | 5-10 | 190 | R | R | MLB | 2004-2006 | Papa Juan XXIII (Bayamon,PR) | $805,000 |
| 2 | 67 | June-Reg | Mike Wilson | OF | 18 | 6-2 | 240 | B | R | AAA | | Booker T. Washington (Tulsa,OK) | $200,000 |
| 3 | 80 | June-Reg | Lazaro Abreu | C | 19 | 6-2 | 195 | R | R | Rookie | | | $469,000 |
| 3 | 99 | June-Reg | Tim Merritt | IF | 21 | 6-0 | 180 | R | R | AA | | University of South Alabama | $390,000 |
| 4 | 129 | June-Reg | Bobby Livingston | P | 18 | 6-3 | 191 | L | L | MLB | 2006-2007 | Trinity Christian (Lubbock,TX) | $275,000 |
| 5 | 159 | June-Reg | John Cole | OF | 21 | 5-11 | 185 | R | R | A | | University of Nebraska | $170,000 |
| 6 | 189 | June-Reg | Justin Ockerman | P | 18 | 6-10 | 250 | L | R | A | | Garden City (Garden City,MI) | $145,000 |
| 7 | 219** | June-Reg | John Axford | P | 18 | 6-5 | 185 | R | R | MLB | 2009-2009 | Assumption College (ON) | |
| 8 | 249 | June-Reg | Jeff Ellena | IF | 21 | 6-0 | 175 | R | R | A | | Cal Poly Pomona | $75,000 |
| 9 | 279 | June-Reg | Justin Blood | P | 21 | 6-3 | 215 | L | L | A+ | | Franklin Pierce University | $65,000 |
| 10 | 309 | June-Reg | Beau Hintz | P | 21 | 6-4 | 210 | L | L | AAA | | Fresno State University | $45,000 |
| 11 | 339 | June-Reg | Josh Ellison | OF | 17 | 5-10 | 200 | R | R | AAA | | Westminster Academy (Fort Lauderdale,FL) | |
| 12 | 369 | June-Reg | Mike Hrynio | 3B | 18 | 6-2 | 190 | R | R | AAA | | Dover (Dover,NJ) | |
| 13 | 399 | June-Reg | Jason Van Meetren | OF | 21 | 6-3 | 200 | R | R | A+ | | Stanford University | |
| 14 | 429 | June-Reg | Blake Woods | SS | 22 | 6-2 | 190 | R | R | A+ | | Grand Canyon University | |
| 15 | 459 | June-Reg | Chris Colton | OF | 18 | 6-1 | 195 | R | R | A+ | | Newnan (Newnan,GA) | |
| 16 | 489 | June-Reg | Sean Peless | IF | 20 | 6-5 | 230 | L | L | A | - | Edmonds Community College | |
| 17 | 519 | June-Reg | Ramon Royce | P | 21 | 6-5 | 215 | R | R | A | | Lewis and Clark College | |
| 18 | 549 | June-Reg | John Williamson | OF | 22 | 6-1 | 200 | B | R | A+ | | East Carolina University | |
| 19 | 579 | June-Reg | Brian Sabourin | P | 17 | 6-3 | 195 | R | R | Rookie | | Dakota Collegiate Institute (Winnipeg,MB) | |
| 20 | 609** | June-Reg | David Purcey | P | 19 | 6-5 | 240 | L | L | MLB | 2008-2009 | Trinity Christian Academy (Addison,TX) | |
| 21 | 639 | June-Reg | Matt Ware | OF | 18 | 6-3 | 205 | R | R | Rookie | | Loyola (Los Angeles,CA) | |
| 22 | 669** | June-Reg | Ladd Hall | P | 19 | 6-3 | 205 | R | R | College | | Buena (Sierra Vista,AZ) | |
| 23 | 699** | June-Reg | Aaron Braithwaite | CF | | | 0 | | | - | | Killian (Miami,FL) | |
| 24 | 729** | June-Reg | Garry Bakker | P | 18 | 6-2 | 216 | R | R | A+ | | Suffern (Suffern,NY) | |
| 25 | 759 | June-Reg | Eddie Olszta | 3B | 22 | 5-10 | 180 | R | R | AAA | | Butler University | |
| 26 | 789 | June-Reg | Jon Nelson | 1B | 21 | 6-5 | 210 | R | R | AAA | | Dixie State College of Utah | |
| 27 | 819 | June-Reg | Timothy Bausher | P | 22 | 6-4 | 205 | R | R | AAA | | Kutztown University | |
| 28 | 849 | June-Reg | David Morrow | P | 20 | 6-1 | 200 | R | R | A | | Grayson County College | |
| 29 | 879** | June-Reg | Kyle Aselton | P | 18 | 6-5 | 215 | R | L | AA | | W.F. West (Chehalis,WA) | |
| 31 | 939 | June-Reg | Jason Rainey | OF | 22 | 6-0 | 185 | L | L | A+ | | Texas Tech University | |
| 32 | 969 | June-Reg | Bryan Vickers | | 18 | 6-4 | 225 | R | R | Ind | | Perrysburg (Perrysburg,OH) | |
| 33 | 999 | June-Reg | Tom Keefer | P | 18 | 6-2 | 180 | R | R | College | | Byng (Ada,OK) | |
| 34 | 1029** | June-Reg | Trevor Heid | OF | 19 | 6-3 | 210 | R | R | A+ | | Dixie State College of Utah | |
| 35 | 1059 | June-Reg | Todd Holliday | P | | | 0 | | | - | | South Charleston (South Charleston,WV) | |
| 36 | 1089 | June-Reg | Ben Hudson | C | 21 | 6-4 | 210 | R | R | A+ | | Truett-McConnell College | |
| 37 | 1119 | June-Reg | Miguel Martinez | P | 18 | 6-2 | 190 | L | L | A+ | | Miami-Dade College | |
| 38 | 1149 | June-Reg | Bobby Cramer | P | 21 | 6-1 | 190 | L | L | AAA | | Long Beach State University | |
| 39 | 1179** | June-Reg | Justin Ruchti | C | 20 | 6-2 | 200 | R | R | AA | | Klein Forest (Houston,TX) | |
| 40 | 1209 | June-Reg | Marquis Pettis | RF | 18 | 6-3 | 195 | L | L | A- | | Diablo Valley College | |
| 41 | 1238** | June-Reg | Kevin Guyette | | 18 | 6-3 | 205 | R | R | AAA | | Chaparral (Scottsdale,AZ) | |
| 42 | 1266 | June-Reg | Ryan Brincat | RF | 17 | 6-3 | 200 | L | L | College | | Mira Costa (Manhattan Beach,CA) | |
| 43 | 1294** | June-Reg | Bradley Pahs | C | 18 | 6-0 | 175 | R | R | - | | Chesterton (Chesterton,IN) | |
| 44 | 1322 | June-Reg | William Keyes | P | 17 | 6-4 | 210 | R | R | College | | St. James (Hagerstown,MD) | |
| 45 | 1350 | June-Reg | Brandon Fusilier | | 19 | 6-2 | 200 | R | R | College | | Navarro College | |
| 46 | 1378 | June-Reg | Alan Gannaway | P | 18 | 6-6 | 190 | R | R | - | | Bessemer Academy (Bessemer,AL) | |
| 47 | 1405** | June-Reg | Ethan Katz | P | 17 | 6-5 | 210 | R | R | A | | University (Los Angeles,CA) | |
| 48 | 1431** | June-Reg | Luis Dejesus | SS | | | 0 | | | - | | Teodoro Aguilar Mora (Yabucoa,PR) | |
| 49 | 1456 | June-Reg | Nicholaus Hamilton | OF | | | 0 | | | - | | West Lowndes (Starkville,MS) | |
| 50 | 1479 | June-Reg | Brandon Espinosa | P | 19 | 6-6 | 200 | R | R | College | | Santa Ana College | |
