| 1 | 11 | June-Reg | Kenny Baugh | P | 22 | 6-4 | 190 | R | R | AAA | | Rice University | $2,012,500 |
| 1 | 32 | June-Reg | Mike Woods | IF | 20 | 6-1 | 200 | R | R | AA | | Southern University | $1,150,000 |
| 2 | 55 | June-Reg | Preston Larrison | P | 20 | 6-4 | 215 | R | R | AAA | | University of Evansville | $450,000 |
| 2 | 65 | June-Reg | Matt Coenen | P | 21 | 6-6 | 230 | L | L | AA | | Charleston Southern University | $620,000 |
| 3 | 87 | June-Reg | Jack Hannahan | 3B | 21 | 6-2 | 200 | L | R | MLB | 2006-2009 | University of Minnesota | $450,000 |
| 4 | 117 | June-Reg | Mike Rabelo | C | 21 | 6-1 | 200 | B | R | MLB | 2006-2008 | University of Tampa | $270,000 |
| 5 | 147 | June-Reg | Ryan Raburn | 3B | 20 | 6-0 | 180 | R | R | MLB | 2004-2009 | South Florida Community College | $185,000 |
| 6 | 177 | June-Reg | Jason Knoedler | OF | 20 | 6-1 | 190 | B | R | AA | | University of Miami | $142,000 |
| 7 | 207 | June-Reg | Tom Farmer | P | 21 | 6-2 | 195 | R | R | AAA | | University of Miami | $30,000 |
| 8 | 237 | June-Reg | Don Kelly | SS | 21 | 6-4 | 190 | L | R | MLB | 2007-2009 | Point Park College | $70,000 |
| 9 | 267 | June-Reg | David Mattle | OF | 21 | 6-0 | 200 | L | R | A+ | | Kent State University | $67,500 |
| 10 | 297 | June-Reg | Vincent Blue | OF | 18 | 6-2 | 180 | L | R | AAA | | Lamar (Houston,TX) | $65,000 |
| 11 | 327** | June-Reg | Eric Thomas | P | 20 | 6-7 | 246 | R | R | A+ | | Briarcliffe College | |
| 12 | 357 | June-Reg | Jim Gonzales | P | 21 | 6-0 | 185 | R | R | A | | University of California-Santa Barbara | |
| 13 | 387 | June-Reg | Landon Stockman | P | 21 | 6-2 | 190 | R | R | A+ | | Kennesaw State University | |
| 14 | 421 | June-Reg | Matt Williams | OF | 17 | 6-2 | 170 | B | R | A- | | Fontana (Fontana,CA) | |
| 15 | 447 | June-Reg | Kevin McDowell | P | 22 | 6-2 | 200 | L | L | AA | | Bucknell University | |
| 16 | 477** | June-Reg | Joey Metropoulos | 3B | 17 | 6-1 | 230 | R | R | A | | Monte Vista (Spring Valley,CA) | |
| 17 | 507 | June-Reg | Dan Smith | P | 22 | 6-4 | 215 | R | R | A+ | | University of Miami | |
| 18 | 537 | June-Reg | Alex Trezza | C-1B | 20 | 6-3 | 210 | L | R | A+ | | Stony Brook University | |
| 19 | 567 | June-Reg | William Ryan | 3B | 19 | 6-3 | 200 | R | R | A- | | Briarcliffe College | |
| 20 | 597 | June-Reg | Jason Moates | P | 22 | 6-2 | 210 | R | R | A+ | | Middle Tennessee State University | |
| 21 | 627** | June-Reg | Tim Dorn | P | 18 | 6-8 | 245 | R | R | A | | Monrovia (Monrovia,CA) | |
| 22 | 657 | June-Reg | Francisco Rosado | OF | 19 | 5-10 | 230 | R | R | Rookie | | Antelope Valley College | |
| 23 | 687 | June-Reg | Mike Scott | OF | 22 | 5-10 | 175 | L | L | A | | University of Connecticut | |
| 24 | 717** | June-Reg | John Schneider | C | 21 | 6-3 | 215 | R | R | AAA | | University of Delaware | |
| 25 | 747 | June-Reg | Chris Kolodzey | OF | 21 | 6-0 | 200 | R | R | A | | University of Delaware | |
| 26 | 777 | June-Reg | Herman Dean | OF | 20 | 6-3 | 190 | R | R | A- | | Citrus College | |
| 27 | 807 | June-Reg | Mike Kobow | P | 22 | 6-4 | 190 | R | R | AA | | University of Minnesota | |
| 28 | 837 | June-Reg | Jon Connolly | P | 17 | 6-0 | 205 | R | L | AAA | | Oneonta (Oneonta,NY) | |
| 29 | 867 | June-Reg | Garth McKinney | OF | 19 | 6-3 | 210 | R | R | AA | | Walters State Community College | |
| 30 | 897 | June-Reg | John Birtwell | P | 21 | 6-2 | 225 | R | R | AAA | | Harvard University | |
| 31 | 927 | June-Reg | Humberto Sanchez | P | 18 | 6-6 | 230 | R | R | MLB | 2008-2008 | Rockland Community College | $1,000,000 |
| 32 | 957 | June-Reg | Trevor Leu | P | 22 | 6-2 | 200 | L | L | A | | Oral Roberts University | |
| 33 | 987 | June-Reg | Michael Howell | P | 21 | 6-4 | 200 | R | R | A+ | | Binghamton University | |
| 34 | 1017 | June-Reg | Ian Ostlund | P | 22 | 6-1 | 200 | R | L | AAA | | Virginia Tech | |
| 35 | 1047 | June-Reg | Charles Lombardy | P | 22 | 6-2 | 210 | L | R | - | | Ohio University | |
| 36 | 1077 | June-Reg | Jed Stringham | OF | 23 | 6-3 | 210 | R | R | A | | University of California-Santa Barbara | |
| 37 | 1107 | June-Reg | Kevin Miller | | | | | | | College | | Cuesta College | |
| 38 | 1137** | June-Reg | Adam Harben | P | 17 | 6-5 | 210 | R | R | AA | | Central Arkansas Christian (North Little Rock,AR) | |
| 39 | 1167 | June-Reg | Robert White | | | | | | | College | | Spartanburg Methodist College | |
| 40 | 1197 | June-Reg | Tom Lyons | P | 18 | 6-2 | 200 | R | R | A- | | Downers Grove North (Downers Grove,IL) | |
| 41 | 1226 | June-Reg | Trey Holloway | P | 18 | 6-1 | 190 | R | L | College | | Booneville (Booneville,AR) | |
| 42 | 1255 | June-Reg | Coby Judd | P | | | 0 | | | - | | Simi Valley (Simi Valley,CA) | |
| 43 | 1283** | June-Reg | Sean Richardson | C | 17 | 6-1 | 185 | R | R | Rookie | | Vista (Vista,CA) | |
| 44 | 1311** | June-Reg | Phil Sobkow | P | 20 | 6-5 | 220 | B | R | A | | Butte College | |
| 45 | 1339 | June-Reg | Brent Hale | P | 19 | 6-2 | 200 | R | R | College | | Palos Verdes Peninsula (Rollings Hills Estates,CA) | |
| 46 | 1367 | June-Reg | Lonnie Patterson | P | 17 | 6-4 | 285 | R | R | Ind | | Harlan (Chicago,IL) | |