| 1 | 9 | June-Reg | Mark Phillips | P | 18 | 6-3 | 215 | L | L | A+ | | Hanover (Hanover,PA) | $2,200,000 |
| 2 | 49 | June-Reg | Xavier Nady | OF | 21 | 6-2 | 205 | R | R | MLB | 2000-2009 | University of California | $1,100,000 |
| 3 | 79 | June-Reg | Omar Falcon | C | 17 | 6-0 | 190 | R | R | AA | | Southridge (Miami,FL) | $425,000 |
| 4 | 109 | June-Reg | Mewelde Moore | OF | 17 | 6-0 | 190 | R | R | Rookie | | Belaire (Baton Rouge,LA) | $250,000 |
| 5 | 139 | June-Reg | Jon Huber | P | 18 | 6-2 | 190 | R | R | MLB | 2006-2007 | North Fort Myers (Fort Myers,FL) | $215,000 |
| 6 | 169 | June-Reg | Ryan Earey | P | 21 | 6-4 | 225 | R | R | A | | University of North Carolina | $130,000 |
| 7 | 199 | June-Reg | Lee Mccool | IF | 21 | 5-11 | 180 | R | R | AAA | | University of North Florida | $80,000 |
| 8 | 229 | June-Reg | David Giorgis | OF | 18 | 6-1 | 195 | B | R | A- | | Rancho Bernardo (San Diego,CA) | $77,500 |
| 9 | 259 | June-Reg | John Scott | P | 18 | 6-1 | 170 | R | R | Rookie | | Ramona (Riverside,CA) | $65,000 |
| 10 | 289 | June-Reg | Kevin Nulton | 2B | 17 | 6-0 | 175 | R | R | A | | El Capitan (Lakeside,CA) | $52,500 |
| 11 | 319 | June-Reg | Joel Klatt | 3B | 18 | 6-2 | 205 | R | R | Rookie | | Pomona (Arvada,CO) | |
| 12 | 349 | June-Reg | Juan Valle | P | | | 0 | | | - | | Efrain Sanchez (Hidalgo Moca,PR) | |
| 13 | 379 | June-Reg | Justin Germano | P | 17 | 6-2 | 190 | R | R | MLB | 2004-2008 | Claremont (Claremont,CA) | |
| 14 | 409 | June-Reg | John Woodward | 1B | 23 | 6-3 | 220 | L | R | A | | University of Houston | |
| 15 | 439 | June-Reg | John DiBetta | 3B | 19 | 6-1 | 190 | R | R | A | | College of Southern Nevada | |
| 16 | 469 | June-Reg | Chuck Lawton | P | 18 | 6-1 | 180 | R | R | Ind | | Palatka (Palatka,FL) | |
| 17 | 499 | June-Reg | Jarrett Roenicke | RF | 20 | 6-2 | 195 | L | L | A- | | Yuba Community College | |
| 18 | 529 | June-Reg | Corey Alexander | OF | | | 0 | | | - | | Forest Brook (Houston,TX) | |
| 19 | 559** | June-Reg | Drew Jenson | 1B | 18 | 6-2 | 200 | L | L | Rookie | | El Capitan (Lakeside,CA) | |
| 20 | 589 | June-Reg | David Day | RF-CF | | | 0 | | | Rookie | | Brigham Young University | |
| 21 | 619 | June-Reg | Michael Adams | | | | | | | College | | Cherokee (Canton,GA) | |
| 22 | 649 | June-Reg | J.J. Furmaniak | IF | 20 | 6-0 | 190 | R | R | MLB | 2005-2007 | Lewis University | |
| 23 | 679 | June-Reg | Craig Thompson | | 22 | 6-0 | 190 | B | R | A | | Stanford University | |
| 24 | 709 | June-Reg | Edgardo Laureano | P | 17 | 6-2 | 170 | R | R | Rookie | | Lorenzo Vizcarrondo (Bayamon,PR) | |
| 25 | 739 | June-Reg | Jack Cassel | P | 19 | 6-2 | 190 | R | R | MLB | 2007-2008 | Los Angeles Pierce College | |
| 26 | 769** | June-Reg | Chad Cordero | P | 18 | 6-0 | 195 | R | R | MLB | 2003-2008 | Don Antonio Lugo (Chino,CA) | |
| 27 | 799 | June-Reg | Kevin Reese | OF | 22 | 5-11 | 195 | L | L | MLB | 2005-2006 | University of San Diego | |
| 28 | 829 | June-Reg | John Herbert | P | 22 | 6-8 | 225 | R | R | AAA | | University of San Francisco | |
| 29 | 859 | June-Reg | Dennis Chapman | P | 21 | 6-3 | 185 | R | R | A | | Towson University | |
| 30 | 889 | June-Reg | Jesse Bussard | P | 22 | 6-2 | 180 | R | R | Rookie | | Sonoma State University | |
| 31 | 919 | June-Reg | Noah Grubenhoff | P | | | 0 | | | - | | Selah (Selah,WA) | |
| 32 | 949 | June-Reg | Jamie Franey | P | | | 0 | | | - | | Ascension College | |
| 33 | 979 | June-Reg | Jarrod Bitter | C | 21 | 6-1 | 220 | R | R | AAA | | University of Houston | |
| 34 | 1009 | June-Reg | Marc Dulkowski | P | 18 | 6-0 | 190 | B | R | A | | Andrew (Tinley Park,IL) | |
| 35 | 1039 | June-Reg | Claiborne Daniels | OF | 18 | 6-2 | 165 | R | R | Rookie | | Stephen F. Austin (Richmond,TX) | |
| 36 | 1069 | June-Reg | Mike Brown | LF | | | 0 | | | - | | Chipola College | |
| 37 | 1099 | June-Reg | Alshawn Rodgers | OF | | | 0 | | | - | | David Starr Jordan (Long Beach,CA) | |
| 38 | 1129** | June-Reg | 0 - | 3B | | | | | | AAA | | Galveston College | |
| 39 | 1159 | June-Reg | Justin Williams | P | 20 | 6-1 | 195 | R | R | Rookie | | Seward County Community College | |
| 40 | 1189 | June-Reg | Andre Gomez | C | 21 | 6-2 | 185 | R | R | A+ | | Cal Poly | |
| 41 | 1218 | June-Reg | Matt Pollard | P | | | 0 | | | - | | Poteau (Poteau,OK) | |
| 42 | 1247 | June-Reg | Jose Garcia | 2B | | | 0 | | | - | | T. Alva Edison Caguas (PR) | |
| 43 | 1276 | June-Reg | Dave Sanders | P | 20 | 6-0 | 200 | L | L | MLB | 2003-2005 | Jenks (Jenks,OK) | |
| 44 | 1303 | June-Reg | Jason Hammond | CF | | | 0 | | | - | | Grossmont College | |
| 45 | 1329 | June-Reg | Daniel Shanahan | P | | | 0 | | | - | | UMS Wright Prep (Mobile,AL) | |