| 1 | 15 | June-Reg | Chase Utley | IF | 21 | 6-1 | 185 | L | R | MLB | 2003-2009 | UCLA | $1,780,000 |
| 3 | 85 | June-Reg | Keith Bucktrot | P | 19 | 6-3 | 190 | L | R | AA | | Claremore (Claremore,OK) | $435,000 |
| 4 | 115 | June-Reg | Danny Gonzalez | SS | 18 | 6-0 | 185 | B | R | AAA | | Florida Air Academy (Melbourne,FL) | $285,000 |
| 5 | 145 | June-Reg | Matt Riethmaier | P | 21 | 6-5 | 215 | R | R | A | | University of Arkansas | $190,000 |
| 6 | 175 | June-Reg | Taylor Buchholz | P | 18 | 6-4 | 220 | R | R | MLB | 2006-2008 | Springfield (Springfield,PA) | $375,000 |
| 7 | 205 | June-Reg | Antonio Cancio | 1B | 18 | 6-3 | 225 | R | R | A | | Plant (Tampa,FL) | $120,000 |
| 8 | 235 | June-Reg | Ryan Carter | P | 20 | 6-7 | 245 | L | L | AA | | UCLA | $79,500 |
| 9 | 265 | June-Reg | Felix Ortega | C | 18 | 5-7 | 175 | R | R | Rookie | | Medardo Carazo (Trujillo Alto,PR) | $58,000 |
| 10 | 295 | June-Reg | Scott Youngbauer | IF | 21 | 6-1 | 175 | B | R | AAA | - | Georgia State University | $51,000 |
| 11 | 325 | June-Reg | Brandon Mayfield | P | 21 | 6-7 | 220 | R | R | A+ | | Auburn University | |
| 12 | 355 | June-Reg | Brandon Caraway | OF | 22 | 6-0 | 180 | B | R | A+ | | University of Houston | |
| 13 | 385 | June-Reg | Carlos Rivera | 1B | 22 | 6-1 | 245 | L | L | MLB | 2003-2004 | Santo Tomas De Aquino (Toa Baja,PR) | |
| 14 | 415 | June-Reg | Mark McRoberts | C | 18 | 6-2 | 195 | R | R | A+ | | Granite Hills (El Cajon,CA) | |
| 15 | 445 | June-Reg | Todd Meldahl | P | 22 | 6-1 | 190 | L | L | A+ | | Washington State University | |
| 16 | 475 | June-Reg | Jeremy Hudson | P | 20 | 6-7 | 210 | R | R | A+ | | Jefferson State Community College | |
| 17 | 505 | June-Reg | Travis Chapman | IF | 22 | 6-2 | 185 | R | R | MLB | 2003-2003 | Mississippi State University | |
| 18 | 535 | June-Reg | Reginald Griggs | 1B | 22 | 6-6 | 245 | L | L | A | | Florida A&M University | |
| 19 | 565 | June-Reg | David Hoffman | P | | | 0 | | | - | | Bradley University | |
| 20 | 595 | June-Reg | Anthony Hensley | OF | 22 | 5-10 | 185 | B | R | A+ | | Baylor University | |
| 21 | 625 | June-Reg | Julio Campos | SS | 22 | 5-11 | 180 | R | R | A+ | | Missouri Baptist University | |
| 22 | 655 | June-Reg | Jamie Bennett | P | 22 | 5-10 | 160 | R | L | A- | | University of Tennessee | |
| 23 | 685 | June-Reg | Chad Sadowski | P | 22 | 6-3 | 220 | R | R | A+ | | University of Wisconsin | |
| 24 | 715 | June-Reg | Melvin Anderson | SS | 20 | 6-0 | 205 | R | R | A | | Southern University | |
| 25 | 745 | June-Reg | Doug Stasio | P | 22 | 6-0 | 190 | R | R | A- | | New York Institute of Technology | |
| 26 | 775 | June-Reg | Brad Steele | | 22 | 6-4 | 205 | R | R | Ind | | University of California | |
| 27 | 805 | June-Reg | Trevor Bullock | | 23 | 6-2 | 190 | L | L | A | | University of Nebraska | |
| 28 | 835 | June-Reg | Kevin Donovan | P | 23 | 5-10 | 190 | L | L | A- | | Mississippi State University | |
| 29 | 865 | June-Reg | Ryan Myers | | | | | | | College | | College of Southern Nevada | |
| 30 | 895 | June-Reg | Chad White | | | | | | | College | | Prattville (Prattville,AL) | |
| 31 | 925 | June-Reg | Preston Underdown | | 22 | 5-11 | 180 | R | R | A- | | Baylor University | |
| 32 | 955 | June-Reg | Kevin Sullivan | C | 22 | 6-1 | 210 | R | R | AAA | | Carthage College | |
| 33 | 985 | June-Reg | Dan Adams | | 22 | 6-0 | 200 | R | R | AA | | Kent State University | |
| 34 | 1015** | June-Reg | Mike Mueller | P | 19 | 6-5 | 220 | R | R | A+ | | Triton College | |
| 35 | 1045** | June-Reg | Jason Sugden | OF | 18 | 6-3 | 180 | B | R | AA | | Central Dauphin (Harrisburg,PA) | |
| 36 | 1075 | June-Reg | Andrew Elskamp | P | 21 | 5-11 | 190 | R | R | A+ | | University of Wisconsin | |
| 37 | 1105** | June-Reg | Kyle Bakker | P | 18 | 6-9 | 250 | L | L | A | | Millard West (Omaha,NE) | |
| 38 | 1135** | June-Reg | Jason Fransz | OF | 19 | 6-3 | 200 | R | R | A+ | | Riverside Community College | |
| 39 | 1165** | June-Reg | Jason Martinez | P | 18 | 5-11 | 190 | L | L | A | | Grand Junction Central (Grand Junction,CO) | |