| 1 | 2 | June-Reg | Adam Johnson | P | 20 | 6-2 | 210 | R | R | MLB | 2001-2003 | Cal State Fullerton | $2,500,000 |
| 1 | 31** | June-Reg | Aaron Heilman | P | 21 | 6-5 | 220 | R | R | MLB | 2003-2009 | University of Notre Dame | |
| 2 | 42** | June-Reg | Tagg Bozied | 1B | 20 | 6-3 | 210 | R | R | AAA | | University of San Francisco | |
| 2 | 54 | June-Reg | J.D. Durbin | P | 18 | 6-0 | 188 | R | R | MLB | 2004-2007 | Coronado (Scottsdale,AZ) | $722,500 |
| 3 | 72 | June-Reg | Colby Miller | P | 18 | 6-2 | 184 | R | R | AA | | Weatherford (Weatherford,OK) | $480,000 |
| 4 | 102 | June-Reg | Jason Miller | P | 17 | 6-1 | 202 | L | L | MLB | 2007-2007 | Sarasota (Sarasota,FL) | $281,000 |
| 5 | 132 | June-Reg | Edgardo Lebron | 3B-1B | 17 | 6-1 | 170 | B | R | A | | Florencia Garcia (Las Piedras,PR) | $265,000 |
| 6 | 162 | June-Reg | Ronnie Corona | P | 21 | 6-0 | 188 | R | R | AA | | Cal State Fullerton | $130,000 |
| 7 | 192 | June-Reg | James Tomlin | OF | 17 | 6-1 | 176 | R | R | AA | | St. Bernard (Playa del Ray,CA) | $90,000 |
| 8 | 222 | June-Reg | Henry Bonilla | P | 21 | 6-0 | 195 | R | R | AAA | | Tulane University | $10,000 |
| 9 | 252 | June-Reg | Ken Holubec | P | 21 | 6-0 | 225 | L | L | A+ | | University of Louisiana at Lafayette | $50,000 |
| 10 | 282 | June-Reg | Kelley Gulledge | C | 21 | 6-1 | 200 | R | R | AAA | | University of Alabama | $65,000 |
| 11 | 312 | June-Reg | Josh Rabe | OF | 21 | 6-2 | 210 | R | R | MLB | 2006-2007 | Quincy University | |
| 12 | 342 | June-Reg | Jason Kubel | OF | 18 | 5-11 | 193 | L | R | MLB | 2004-2009 | Highland (Palmdale,CA) | |
| 13 | 372** | June-Reg | Shane Boyd | P | 17 | 6-2 | 215 | R | R | College | | Henry Clay (Lexington,KY) | |
| 14 | 402 | June-Reg | Cory Agar | 1B-C | 19 | 5-11 | 212 | R | R | A | | | |
| 15 | 432 | June-Reg | Jeff Lincoln | P | 22 | 6-2 | 189 | R | R | A+ | | Western Kentucky University | |
| 16 | 462 | June-Reg | Daniel Decola | C | 20 | 6-1 | 202 | R | R | A | | Slippery Rock University of Pennsylvania | |
| 17 | 492** | June-Reg | Paul Maholm | P | 18 | 6-2 | 215 | L | L | MLB | 2005-2009 | Germantown (Germantown,TN) | |
| 18 | 522 | June-Reg | Andrew Persby | P | 22 | 6-4 | 247 | R | R | A+ | | University of Minnesota | |
| 19 | 552 | June-Reg | Bruce Dohrman | OF | 19 | 6-3 | 225 | L | R | Rookie | | Garrett (Garrett,IN) | |
| 20 | 582** | June-Reg | T.J. Prunty | P | 18 | 6-3 | 200 | R | R | A | | St Paul Academy Summit (Inner Grove Heights,MN) | |
| 21 | 612 | June-Reg | Mark Michael | 3B | | 6-5 | 185 | R | R | - | | Gloucester Catholic (Gloucester,NJ) | |
| 22 | 642 | June-Reg | Brett Groves | SS | 21 | 6-0 | 185 | B | R | AA | | Florida State University | |
| 23 | 672 | June-Reg | Jered Goodwin | | | | | | | College | | Oviedo (Oviedo,FL) | |
| 24 | 702 | June-Reg | Sam Taylor | | 17 | 5-7 | 158 | B | R | AA | | Skyline (Oakland,CA) | |
| 25 | 732 | June-Reg | Joseph Hamer | C | 19 | | 0 | | | - | | Newbury Park (Newbury Park,CA) | |
| 26 | 762 | June-Reg | Jeremy Fortner | | | | | | | College | | Venice (Venice,FL) | |
| 27 | 792** | June-Reg | Steve Reiss | | 17 | 6-5 | 190 | R | R | Rookie | | Vaughan (Thornhill,ON) | |
| 28 | 822** | June-Reg | Daniel Davidson | P | 19 | 6-4 | 225 | L | L | MLB | 2009-2009 | Gulf Coast Community College | |
| 29 | 852 | June-Reg | Tom Sullivan | P | 21 | 5-10 | 170 | L | L | Rookie | | Slippery Rock University of Pennsylvania | |
| 30 | 882 | June-Reg | Shawn Cline | C | 18 | 6-1 | 215 | R | R | Rookie | | Baker County (MacClenny,FL) | |
| 31 | 912 | June-Reg | Beau Kemp | P | 19 | 6-0 | 188 | R | R | AAA | | Saddleback College | |
| 32 | 942 | June-Reg | Cody Kimball | P | 18 | 6-4 | 190 | R | R | Ind | | MacArthur (Irving,TX) | |
| 33 | 972 | June-Reg | David Nowak | CF | 19 | 6-3 | 190 | L | L | Ind | | Arcadia (Phoenix,AZ) | |
| 34 | 1002 | June-Reg | Luke Martin | P | 21 | 5-10 | 203 | L | L | A+ | | Embry-Riddle University | |
| 35 | 1032 | June-Reg | Gregory Stokes | 3B | 21 | 6-1 | 183 | R | R | Rookie | | Slippery Rock University of Pennsylvania | |
| 36 | 1062 | June-Reg | Pedro Sanchez | P | 18 | 5-11 | 160 | L | L | Rookie | | Adolfina Irizarry De Puig (PR) | |
| 37 | 1092 | June-Reg | Chad Pylate | P | 19 | 6-1 | 200 | R | R | A | | Vancleave (Vancleave,MS) | |
| 38 | 1122 | June-Reg | John Lynch | P | 19 | 6-1 | 190 | L | L | Rookie | | Elk River (Rogers,MN) | |
| 39 | 1152 | June-Reg | Marco Gonzales | C | 16 | 6-0 | 200 | R | R | AAA | | Eastlake (Chula Vista,CA) | |
| 40 | 1182 | June-Reg | Scott Suraci | LF-RF | 22 | 6-4 | 215 | L | R | Ind | | Hawaii Pacific University | |
| 41 | 1211 | June-Reg | Terry Corn | P | 21 | 6-2 | 215 | R | R | - | | Florida Southern College | |
| 42 | 1240** | June-Reg | Steve Garabrants | 2B | 18 | 5-10 | 175 | R | R | College | | Moon Valley (Phoenix,AZ) | |
| 43 | 1269** | June-Reg | Jeff Marquez | P | 18 | 6-0 | 200 | L | R | A+ | | | |
| 44 | 1297 | June-Reg | Brian Poetschlag | P | 18 | | 0 | | | - | | Magnolia (Anaheim,CA) | |
| 45 | 1323 | June-Reg | Austin Polk | P | | | 0 | | | - | | Coppell (Coppell,TX) | |
| 46 | 1348 | June-Reg | Brian Baron | OF | 21 | 5-11 | 200 | L | R | AA | | UCLA | |
| 47 | 1372** | June-Reg | Peter Eberhardt | P | 18 | 6-3 | 215 | R | R | A- | | Whittier Christian (La Habra,CA) | |
| 48 | 1393 | June-Reg | Tanner Munsey | C | 18 | 6-2 | 200 | R | R | Rookie | | Oyster River (Durham,NH) | |
| 49 | 1413 | June-Reg | Ben Riley | | 19 | 6-0 | 197 | L | L | College | | Iowa Western Community College | |
| 50 | 1433 | June-Reg | John Garrard | SS | | | 0 | | | - | | Brownsburg (Brownsburg,IN) | |