| 1 | 12 | June-Reg | Brett Myers | P | 18 | 6-4 | 215 | R | R | MLB | 2002-2009 | Jacksonville University | $2,050,000 |
| 2 | 63** | June-Reg | Jason Cooper | H | 18 | 6-2 | 220 | L | L | AAA | | Moses Lake (Moses Lake,WA) | |
| 3 | 96 | June-Reg | Russ Jacobson | C | 20 | 6-3 | 210 | R | R | AAA | | University of Miami | |
| 4 | 126 | June-Reg | Brad Pautz | P | 22 | 6-3 | 190 | R | R | AA | | University of Minnesota | |
| 5 | 156** | June-Reg | Joe Saunders | P | 18 | 6-3 | 195 | L | L | MLB | 2005-2009 | West Springfield (Springfield,VA) | |
| 6 | 186 | June-Reg | Daniel Tosca | C | 18 | 6-0 | 180 | L | R | A+ | - | Durant (Plant City,FL) | |
| 7 | 216** | June-Reg | Dave Gil | P | 20 | 6-4 | 210 | R | R | AAA | | University of Miami | |
| 8 | 246 | June-Reg | Jesse Thrasher | P | 18 | 6-3 | 220 | R | R | Ind | | Benton (St. Joseph,MO) | |
| 9 | 276 | June-Reg | Julio Collazo | SS | 18 | 5-10 | 155 | R | R | A | | Mississippi Delta Community College | |
| 10 | 306 | June-Reg | Marlon Byrd | OF | 21 | 6-0 | 225 | R | R | MLB | 2002-2009 | Georgia Perimeter College | |
| 11 | 336 | June-Reg | Richard Legette | P | 18 | 6-2 | 210 | L | R | Rookie | | Stratford (Goose Creek,SC) | |
| 12 | 366 | June-Reg | Brian Bush | OF | 22 | 6-1 | 180 | R | R | A+ | | University of Texas-San Antonio | |
| 13 | 396 | June-Reg | Frank Brooks | P | 20 | 6-1 | 195 | L | L | MLB | 2004-2005 | Saint Peter's College | |
| 14 | 426 | June-Reg | Jovanathan Clark | LF | 17 | | 0 | | | - | | Vallejo (Vallejo,CA) | |
| 15 | 456 | June-Reg | Mark Outlaw | P | 22 | 6-1 | 180 | L | L | AA | | Baylor University | |
| 16 | 486 | June-Reg | Chris Keelin | P | 22 | 6-2 | 190 | R | R | AA | | Montclair State University | |
| 17 | 516 | June-Reg | Brad Tucker | P | | | 0 | | | A- | | Pepperdine University | |
| 18 | 546 | June-Reg | Rob Avila | C | 20 | 5-11 | 200 | R | R | AA | | Master's College, The | |
| 19 | 576** | June-Reg | Thomas Saye | P | 18 | 6-0 | 180 | B | R | Rookie | | Newberry (Newberry,SC) | |
| 20 | 606 | June-Reg | Hector Serrano | C | | | 0 | | | - | | Juan Ponce De Leon (Sabana Hoyos,PR) | |
| 21 | 636 | June-Reg | Aaron Merhoff | LF | 23 | 6-2 | 220 | R | R | A+ | | Texas Lutheran University | |
| 22 | 666 | June-Reg | Justin Duarte | C | 22 | 6-2 | 210 | R | R | AA | | Azusa Pacific University | |
| 23 | 696 | June-Reg | Todd Eagle | C | 18 | | 0 | | | Rookie | | Albany (Albany,CA) | |
| 24 | 726 | June-Reg | Joseph Schley | CF | | | 0 | | | A- | | Southern Illinois University | |
| 25 | 756 | June-Reg | Brian Hitchcox | SS | 20 | 5-11 | 175 | R | R | AAA | | Samford University | |
| 26 | 786 | June-Reg | Justin Fry | P | 22 | 6-3 | 195 | R | R | A+ | | Ohio State University | |
| 27 | 816 | June-Reg | Dan O'Neill | | 22 | 6-1 | 180 | R | L | AAA | | University of Illinois | |
| 28 | 846 | June-Reg | Thomas Batson | 3B | 22 | 5-11 | 180 | R | R | AA | | Northwestern State University | |
| 29 | 876 | June-Reg | Randon Ho | P | | | 0 | | | - | | University of Hawaii | |
| 30 | 906 | June-Reg | Chad Smith | P | | | 0 | | | A- | | Indiana University | |
| 31 | 936 | June-Reg | Wade Van Vark | CF | | | 0 | | | Rookie | | Central (IA) | |
| 32 | 966 | June-Reg | Jay Sitzman | OF | 21 | 6-3 | 195 | L | L | AA | | Arizona State University | |
| 33 | 996 | June-Reg | Dean Muthig | 3B | 21 | 5-11 | 205 | R | R | A- | | Carthage College | |
| 34 | 1026 | June-Reg | Charles Carey | P | | | 0 | | | - | | Cuesta College | |
| 35 | 1056 | June-Reg | Chris Herman | SS | | | | | | - | | Mount San Antonio College | |
| 36 | 1086 | June-Reg | Todd Simo | | | | | | | College | | New Providence (New Providence,NJ) | |
| 37 | 1116 | June-Reg | Ryan Brookman | P | 22 | 6-0 | 190 | R | R | A | | University of Wisconsin | |
| 38 | 1146** | June-Reg | Jon Uhl | P | 18 | 6-2 | 190 | R | R | A | | Leto (Tampa,FL) | |
| 39 | 1176** | June-Reg | Kameron Loe | P | 17 | 6-8 | 220 | R | R | MLB | 2004-2008 | Granada Hills (Granada Hills,CA) | |
| 40 | 1206 | June-Reg | Lawrence Alexander | OF | 18 | 6-1 | 170 | R | R | Rookie | | Chandler (Chandler,OK) | |
| 41 | 1236 | June-Reg | Todd Oetting | C | 18 | 6-2 | 200 | R | R | Ind | | Jefferson City (Jefferson City,MO) | |
| 42 | 1264 | June-Reg | Erick Rivera | OF | 18 | 6-2 | 200 | R | R | A+ | | Luis Munoz Marin (Anasco,PR) | |
| 43 | 1291 | June-Reg | Nicholas White | P | | | 0 | | | - | | Arapahoe (Littleton,CO) | |
| 44 | 1318** | June-Reg | Jordan Pickens | 1B | 18 | 6-2 | 190 | R | R | A+ | | | |