| 1 | 5 | June-Reg | B.J. Garbe | OF | 18 | 6-2 | 195 | R | R | AA | | Moses Lake (Moses Lake,WA) | $2,750,000 |
| 2 | 56 | June-Reg | Rob Bowen | C | 18 | 6-2 | 211 | R | R | MLB | 2003-2008 | Homestead (Fort Wayne,IN) | |
| 3 | 89 | June-Reg | Justin Morneau | 1B | 18 | 6-4 | 205 | L | R | MLB | 2003-2009 | New Westminster (New Westminster,BC) | $290,000 |
| 4 | 119 | June-Reg | Jeff Randazzo | P | 17 | 6-7 | 200 | R | L | AA | | | $392,000 |
| 5 | 149 | June-Reg | Brent Schoening | P | 21 | 6-1 | 195 | R | R | AAA | | Auburn University | |
| 6 | 179 | June-Reg | Brian Wolfe | P | 18 | 6-3 | 220 | R | R | MLB | 2007-2009 | Servite (Anaheim,CA) | |
| 7 | 209** | June-Reg | Darren Ciraco | OF | 18 | 6-2 | 200 | R | R | A+ | | Pelham Memorial (Pelham,NY) | |
| 8 | 239 | June-Reg | Matt Scanlon | IF | 21 | 5-11 | 181 | L | R | AAA | | University of Minnesota | |
| 9 | 269 | June-Reg | Grant Gregg | P | 19 | 6-3 | 230 | L | L | AA | | McLennan Community College | |
| 10 | 299 | June-Reg | Jim Caine | P | | | | | | College | | St. Charles (St. Charles,IL) | |
| 11 | 329** | June-Reg | Michael Prochaska | P | 19 | 6-1 | 200 | L | L | AAA | | Leesville Road (Raleigh,NC) | |
| 12 | 359** | June-Reg | Curtis Johnson | P | 21 | 6-0 | 170 | R | R | College | | University of California | |
| 13 | 389** | June-Reg | Seth Morris | OF | 18 | 6-2 | 200 | R | R | A | | Hamilton (Hamilton,OH) | |
| 14 | 419** | June-Reg | Brian Slocum | P | 18 | 6-4 | 190 | R | R | MLB | 2006-2008 | Iona Prep (New Rochelle,NY) | |
| 15 | 449** | June-Reg | John Wilson | C | 20 | 6-1 | 210 | R | R | AAA | | University of Kentucky | |
| 16 | 479 | June-Reg | Kevin West | OF | 19 | 6-2 | 195 | R | R | AAA | | Mendocino College | |
| 17 | 509** | June-Reg | John Larson | P | | | 0 | | | - | | Eastern Illinois University | |
| 18 | 539 | June-Reg | Barry Quickstad | OF | 18 | 6-1 | 194 | L | R | A | | Waseca (Waseca,MN) | |
| 19 | 569 | June-Reg | Paul Poplin | P | | | | | | Rookie | | University of North Carolina | |
| 20 | 599 | June-Reg | Travis Bowyer | P | 17 | 6-3 | 212 | R | R | MLB | 2005-2005 | Liberty (Bedford,VA) | |
| 21 | 629 | June-Reg | Chad Wandall | | 22 | 5-11 | 191 | R | R | Rookie | | Auburn University | |
| 22 | 659 | June-Reg | Ricky Manning | OF | 18 | 5-11 | 183 | L | L | A | | Edison (Fresno,CA) | |
| 23 | 689 | June-Reg | Willie Eyre | P | 20 | 6-1 | 200 | R | R | MLB | 2006-2009 | College of Eastern Utah | |
| 24 | 719** | June-Reg | Danny Matienzo | C | 18 | 5-10 | 190 | R | R | AA | | Columbus (Miami,FL) | |
| 25 | 749 | June-Reg | Craig Patterson | C | 21 | 6-1 | 170 | R | R | - | | Cal State Fullerton | |
| 26 | 779 | June-Reg | Terry Tiffee | IF | 20 | 6-3 | 212 | B | R | MLB | 2004-2008 | Pratt Community College | |
| 27 | 809 | June-Reg | Jess Turner | P | 20 | 6-2 | 190 | L | R | Ind | | Centralia College | |
| 28 | 839 | June-Reg | Brad Weis | | 21 | 5-11 | 185 | L | L | AAA | | Auburn University | |
| 29 | 869 | June-Reg | Sherwin Lockridge | SS | | | 0 | | | Ind | | Florida A&M University | |
| 30 | 899 | June-Reg | Matt Reed | SS | 18 | 5-11 | 155 | R | R | Rookie | | Haines City (Haines City,FL) | |
| 31 | 929** | June-Reg | Ryan Miller | P | 21 | 6-1 | 200 | R | R | AA | | University of Evansville | |
| 32 | 959** | June-Reg | Jeff Balser | P | 18 | 6-1 | 210 | R | R | A+ | | Venice (Venice,FL) | |
| 33 | 989** | June-Reg | Billy Keppinger | LF | 20 | 6-0 | 195 | L | L | AA | | Lake City Community College | |
| 34 | 1019 | June-Reg | John Thomman | CF | 17 | 6-4 | 212 | R | R | Rookie | | Levelland (Levelland,TX) | |
| 35 | 1049 | June-Reg | Jason Richardson | P | 19 | 6-3 | 215 | R | R | AAA | | Polk State College | |
| 36 | 1079** | June-Reg | Joey Monahan | IF | 18 | 6-0 | 189 | R | R | A+ | | | |
| 37 | 1109 | June-Reg | Digno Torres | OF | 19 | 6-4 | 190 | L | L | A+ | | Lake City Community College | |
| 38 | 1139 | June-Reg | Scott Blackwell | P | 19 | 6-2 | 206 | R | R | A | | Lincoln Land Community College | |
| 39 | 1169 | June-Reg | Beau Vaughan | P | 18 | 6-4 | 230 | B | R | AAA | | Mountain Ridge (Glendale,AZ) | |
| 40 | 1199 | June-Reg | Richard Smart | P | 19 | 6-4 | 190 | L | L | A | | Gulf Coast Community College | |
| 41 | 1229 | June-Reg | Michael Stavey | 1B | | | 0 | | | - | | Eustis (Eustis,FL) | |
| 42 | 1257 | June-Reg | Michael Wrenn | C | 21 | 6-1 | 185 | R | R | A | | Saint Leo University | |
| 43 | 1284 | June-Reg | Bryan Williamson | OF | 22 | 6-6 | 220 | R | R | Rookie | | University of Washington | |
| 44 | 1311 | June-Reg | Chuck Campbell | P | | | 0 | | | - | | | |
| 45 | 1337** | June-Reg | Pat Neshek | P | 18 | 6-3 | 200 | B | R | MLB | 2006-2008 | Park Center (Brooklyn Park,MN) | |
| 46 | 1362 | June-Reg | Maurice Powell | P | 18 | 5-11 | 170 | R | R | Rookie | | Upland (Upland,CA) | |
| 47 | 1386** | June-Reg | Luke Field | P | 20 | 5-11 | 170 | R | R | AA | | Barton County Community College | |
| 48 | 1410 | June-Reg | Casey Rauschenberger | 3B | | | 0 | | | - | | Oakland (Mufreesboro,TN) | |
| 49 | 1434** | June-Reg | David Slevin | 2B | 18 | 5-10 | 170 | R | R | A- | | Carroll (Fort Pierce,FL) | |
| 50 | 1457 | June-Reg | Joseph Ammirato | CF | 18 | | 0 | | | College | | Marina (Huntington Beach,CA) | |