| 1 | 12 | June-Reg | Adam Everett | SS | 21 | 6-0 | 156 | R | R | MLB | 2001-2009 | University of South Carolina | $1,725,000 |
| 3 | 85 | June-Reg | Mike Maroth | P | 20 | 6-0 | 180 | L | L | MLB | 2002-2007 | University of Central Florida | |
| 4 | 115 | June-Reg | Jerome Gamble | P | 18 | 6-2 | 202 | R | R | AAA | | Benjamin Russell (Alexander City,AL) | |
| 5 | 145 | June-Reg | Josh Hancock | P | 20 | 6-3 | 217 | R | R | MLB | 2002-2007 | | |
| 6 | 175 | June-Reg | Richard Riccobono | P | 18 | 6-2 | 225 | R | R | A+ | | Commack (Commack,NY) | |
| 7 | 205** | June-Reg | Keto Anderson | 2B | 19 | 5-11 | 180 | L | R | A | | Prattville (Prattville,AL) | |
| 8 | 235 | June-Reg | Will Silverthorn | P | 19 | 6-1 | 190 | L | L | Ind | | Pearce (Richardson,TX) | |
| 9 | 265** | June-Reg | Mark Teixeira | 3B | 18 | 6-3 | 225 | B | R | MLB | 2003-2009 | Mount Saint Joseph (Baltimore,MD) | |
| 10 | 295** | June-Reg | Lenny DiNardo | P | 18 | 6-4 | 190 | L | L | MLB | 2004-2009 | Santa Fe (Alachua,FL) | |
| 11 | 325 | June-Reg | Carlos Rodriguez | OF | 21 | 6-1 | 227 | R | R | A+ | | | |
| 12 | 355 | June-Reg | David Benham | C | 22 | 6-2 | 187 | R | R | AA | | Liberty University | |
| 13 | 385** | June-Reg | Mike Rabelo | C | 18 | 6-1 | 200 | B | R | MLB | 2006-2008 | Ridgewood (New Port Richey,FL) | |
| 14 | 415 | June-Reg | Matt Phillips | | 20 | 5-11 | 190 | R | R | A | | University of Delaware | |
| 15 | 445 | June-Reg | Lance Surridge | P | 21 | 6-4 | 200 | L | R | A+ | | University of North Carolina | |
| 16 | 475 | June-Reg | Jason Norton | P | 22 | 6-3 | 205 | R | R | AA | | University of South Alabama | |
| 17 | 505 | June-Reg | Benito Flores | P | 22 | 6-1 | 185 | L | L | A+ | | Cal State Fullerton | |
| 18 | 535 | June-Reg | Terrance Hill | P | 22 | 5-10 | 170 | L | L | AA | | Southern University | |
| 19 | 565 | June-Reg | Shon Norris | P | 21 | 6-2 | 185 | R | R | A- | | University of North Carolina | |
| 20 | 595 | June-Reg | Tony James | 2B | 22 | 5-10 | 180 | R | R | A | | San Jose State University | |
| 21 | 625 | June-Reg | Andrew Checketts | | 22 | 5-10 | 185 | R | R | Ind | | Oregon State University | |
| 22 | 655 | June-Reg | Thomas Linarelli | P | 21 | 6-3 | 210 | R | R | A- | | University of Washington | |
| 23 | 685 | June-Reg | Drew Larned | C | 22 | 6-0 | 190 | R | R | AA | | Fairfield University | |
| 24 | 715 | June-Reg | Josh Adeeb | CF | 22 | 6-1 | 190 | R | R | A- | | Vanderbilt University | |
| 25 | 745 | June-Reg | John Hattig | IF | 18 | 6-2 | 215 | B | R | MLB | 2006-2006 | | |
| 26 | 775** | June-Reg | Ben Kozlowski | P | 17 | 6-6 | 220 | L | L | MLB | 2002-2002 | Seminole (Seminole,FL) | |
| 27 | 805** | June-Reg | David Gates | RF | 17 | 6-1 | 200 | R | R | AA | | Butler University | |
| 28 | 835** | June-Reg | Jason Blanton | P | 18 | 6-4 | 235 | R | R | A+ | | Brevard Community College | |
| 29 | 865 | June-Reg | Ryan Siebert | P | | | 0 | | | - | | Germantown W. (Memphis,AZ) | |
| 30 | 895 | June-Reg | James Garcia | P | 18 | 6-0 | 210 | R | R | AAA | | West Torrance (Torrance,CA) | |
| 31 | 925 | June-Reg | Robert Floyd | P | | | 0 | | | - | | Satsuma (Satsuma,AL) | |
| 32 | 955 | June-Reg | Richard Hart | 1B | 22 | 6-0 | 220 | R | R | - | | Lubbock Christian (Lubbock,TX) | |
| 33 | 985 | June-Reg | Heath Heiberger | P | 18 | 6-4 | 220 | L | L | A | | Putnam County (Granville,IL) | |
| 34 | 1015 | June-Reg | Chadwick Johnson | C | | | 0 | | | A- | | Bradley University | |
| 35 | 1045 | June-Reg | Mark Younk | | | | | | | College | | Texas (Texarkana,TX) | |
| 36 | 1075 | June-Reg | Tonayne Brown | OF | 20 | 5-11 | 190 | R | L | AA | | Lurleen B. Wallace Community College | |
| 37 | 1105 | June-Reg | Anthony Caridi | C | | | 0 | | | Rookie | | Klein (Klein,TX) | |
| 38 | 1135 | June-Reg | Dennis Tankersley | P | 19 | 6-2 | 185 | R | R | MLB | 2002-2004 | Merrimack College | |
| 39 | 1165 | June-Reg | Rob Shabansky | P | 21 | 5-10 | 180 | L | L | A+ | | University of Arizona | |
| 40 | 1195 | June-Reg | Philip Ledesma | OF | 23 | 5-11 | 175 | R | R | A- | | Rider University | |
| 41 | 1225** | June-Reg | Jason Fingers | | 19 | 6-5 | 180 | R | R | A | | Central Arizona College | |
| 42 | 1255 | June-Reg | Bryan Barnowski | DH | 17 | 6-2 | 205 | R | R | A | | Southwick (Southwick,MA) | |
| 43 | 1283 | June-Reg | Ronald Bohinski | SS | | | 0 | | | - | | Lakeland (Lakeland,FL) | |
| 44 | 1309 | June-Reg | John Parrado | | 18 | 6-1 | 205 | R | R | College | | Hialeah-Miami Lakes (Hialeah,FL) | |
| 45 | 1333 | June-Reg | Jonathan Smithers | 3B | | | 0 | | | - | | Florida Community College | |
| 46 | 1356 | June-Reg | Chris Hart | | 18 | 6-1 | 190 | B | R | College | | Clearwater (Clearwater,FL) | |
| 47 | 1378 | June-Reg | Richie Smith | | 18 | 5-11 | 200 | L | R | College | | Liberty County (Bristol,FL) | |
| 48 | 1399 | June-Reg | Darry Burgess | P | | | 0 | | | - | | Alvin (Alvin,TX) | |