| 1 | 10 | June-Reg | Carlos Pena | 1B | 20 | 6-2 | 210 | L | L | MLB | 2001-2009 | Northeastern University | $1,850,000 |
| 2 | 53 | June-Reg | Cody Nowlin | OF | 18 | 6-3 | 190 | L | R | A+ | | Clovis (Clovis,CA) | |
| 3 | 83** | June-Reg | Barry Zito | P | 20 | 6-4 | 205 | L | L | MLB | 2000-2009 | UCLA | $0 |
| 4 | 113 | June-Reg | Antwon Rollins | OF | 18 | 6-1 | 190 | R | R | A | | Encinal (Alameda,cA) | |
| 5 | 143 | June-Reg | Ryan Dittfurth | P | 18 | 6-6 | 200 | R | R | AA | | Union (Union) | |
| 6 | 173 | June-Reg | Frankie McGill | P | 18 | 6-1 | 200 | R | R | A | | Tate (Cantonment,FL) | |
| 7 | 203 | June-Reg | John Stewart | P | 20 | 6-4 | 180 | L | L | A+ | | Western Michigan University | |
| 8 | 233** | June-Reg | Brad Ticehurst | CF | 21 | 6-2 | 200 | L | R | A | | USC | |
| 9 | 263 | June-Reg | Andy Pratt | P | 18 | 5-11 | 160 | L | L | MLB | 2002-2004 | Chino Valley (Chino Valley,AZ) | |
| 10 | 293 | June-Reg | Justin Backsmeyer | P | 18 | 6-4 | 220 | R | R | A+ | | De Smet Jesuit (Creve Coeur,MO) | |
| 11 | 323 | June-Reg | Cesar Castaneda | 3B | 21 | 6-3 | 210 | R | R | A | | Dallas Baptist University | |
| 12 | 353 | June-Reg | Daniel Boublis | P | 21 | 6-0 | 190 | R | R | A | | Villanova University | |
| 13 | 383 | June-Reg | Jeremiah Bullock | P | 18 | 6-1 | 180 | L | L | A | | Kuna (Kuna,ID) | |
| 14 | 413 | June-Reg | Derek Ottevaere | 1B | 22 | 6-2 | 215 | R | R | A | | Western Michigan University | |
| 15 | 443 | June-Reg | William Vigeland | P | 21 | 6-1 | 185 | R | R | A+ | | University of Washington | |
| 16 | 473 | June-Reg | Domingo Valdez | P | 18 | 6-2 | 220 | L | L | A+ | | Moody (Corpus Christi,TX) | |
| 17 | 503 | June-Reg | Dave Meliah | OF | 21 | 6-3 | 185 | L | R | AAA | | University of San Francisco | |
| 18 | 533** | June-Reg | Michael Schaeffer | | | | | | | College | | Saint Louis University | |
| 19 | 563** | June-Reg | Mike Daniel | | 13 | 6-4 | 185 | L | R | AAA | | Lambuth University | |
| 20 | 593** | June-Reg | Ryan Knox | OF | 21 | 6-0 | 185 | R | R | AAA | | Illinois State University | |
| 21 | 623 | June-Reg | Matthew Kosderka | P | 22 | 6-2 | 215 | R | R | A+ | | Willamette University | |
| 22 | 653** | June-Reg | John Shelley | 3B | 18 | | 0 | | | - | | Santa Margarita Catholic (Rancho Santa Margarita,CA) | |
| 23 | 683 | June-Reg | Frank Marciante | 1B | 19 | 6-3 | 215 | B | R | A | - | Palm Beach (West Palm Beach,FL) | |
| 24 | 713 | June-Reg | Jason Edgar | 2B | 22 | 6-0 | 175 | L | R | Rookie | | University of Connecticut | |
| 25 | 743 | June-Reg | Mike Moorehead | P | | | 0 | | | - | | Franklin Cou. Bowersville (CA) | |
| 26 | 773 | June-Reg | Jimmie Romano | C | 21 | 5-10 | 185 | R | R | A+ | | University of South Florida | |
| 27 | 803 | June-Reg | Jeremy Jones | C | 20 | 6-3 | 195 | R | R | AA | | Arizona State University | |
| 28 | 833 | June-Reg | Robert Lamarsh | P | 21 | 6-4 | 245 | R | L | A+ | | Southern Illinois University | |
| 29 | 863** | June-Reg | Ronnie Corona | P | 19 | 6-0 | 188 | R | R | AA | | Cypress College | |
| 30 | 893** | June-Reg | Jaime Bubela | OF | 20 | 6-1 | 200 | L | R | MLB | 2005-2005 | Blinn College | |
| 31 | 923 | June-Reg | Marcus Quinones | SS | 22 | 6-1 | 190 | B | R | A+ | | Dallas Baptist University | |
| 32 | 953 | June-Reg | Gregory Summers | OF | | | 0 | | | - | | Port St. Joe (Port St. Joe,FL) | |
| 33 | 983 | June-Reg | Ryan Cullen | P | 18 | 6-4 | 220 | L | L | AAA | | Satellite (Satellite Beach,FL) | |
| 34 | 1013 | June-Reg | Josh Bolingbroke | C | | | | | | College | | Pleasant Grove (HS.) | |
| 35 | 1043 | June-Reg | William Villamil | P | 17 | 6-1 | 165 | L | L | Rookie | | Academia Pre. (Carolina,PR) | |
| 36 | 1073 | June-Reg | Eric Moore | P | 22 | 6-4 | 200 | R | R | A | | Lambuth University | |
| 37 | 1103 | June-Reg | Jon Harris | | 19 | 6-1 | 195 | R | R | College | | | |
| 38 | 1133** | June-Reg | Trent Pratt | C | 18 | 6-2 | 208 | R | R | AA | - | Tooele (Tooele,UT) | |
| 39 | 1163 | June-Reg | Gregory Ryan | P | | | 0 | | | Rookie | | Eastern Michigan University | |
| 40 | 1193 | June-Reg | Craig Mosher | | 19 | 6-0 | 200 | R | L | Ind | | Southern Richmond (Richmond,BC) | |
| 41 | 1223** | June-Reg | Scott Nicholson | P | 18 | 6-0 | 170 | L | L | A- | | Lower Columb. (Longview,MA) | |
| 42 | 1253** | June-Reg | Ross Peeples | P | 18 | 6-4 | 198 | L | L | A+ | | Crisp County (Cordele,GA) | |
| 43 | 1281 | June-Reg | Derrick Foster | P | | | 0 | | | - | | Pell City (Pell City,AL) | |
| 44 | 1307** | June-Reg | Josh Hollingsworth | SS-3B | 18 | 6-3 | 210 | R | R | A+ | | | |
| 45 | 1331** | June-Reg | Greg Bochy | P | 18 | 6-2 | 200 | R | R | A | | Palomar College | |
| 46 | 1355 | June-Reg | Damon Sementilli | | | | | | | College | | Norwalk Community College | |
| 47 | 1377 | June-Reg | Roy York | | | | | | | College | | Cowley College | |
| 48 | 1398 | June-Reg | Shaun Rudi | OF | | | 0 | | | - | | Baker (Baker City,OR) | |
| 49 | 1417 | June-Reg | Marcis Hassell | OF | | | 0 | | | - | | Sam Houston (Arlington,TX) | |
| 50 | 1433 | June-Reg | Albert Montes | P | 18 | 6-2 | 210 | R | R | AA | | Socorro (El Paso,TX) | |