| 1 | 19 | June-Reg | Tony Torcato | OF | 18 | 6-1 | 195 | L | R | MLB | 2002-2005 | Woodland (Woodland,CA) | $975,000 |
| 1 | 25 | June-Reg | Nate Bump | P | 21 | 6-2 | 185 | R | R | MLB | 2003-2005 | Penn State University | $750,000 |
| 1 | 29 | June-Reg | Arturo Mcdowell | OF | 18 | 6-1 | 175 | L | L | AA | | Forest Hill (West Palm Beach,FL) | $937,500 |
| 1 | 38 | June-Reg | Chris Jones | P | 18 | 6-3 | 195 | L | L | AA | | South Mecklenburg (Charlotte,NC) | $587,500 |
| 1 | 41 | June-Reg | Jeff Urban | P | 21 | 6-8 | 215 | R | L | AAA | | Ball State University | $650,000 |
| 2 | 68 | June-Reg | Sammy Serrano | C | 21 | 6-2 | 205 | R | R | A+ | | Stetson University | |
| 2 | 72 | June-Reg | Chris Magruder | OF | 21 | 5-11 | 200 | B | R | MLB | 2001-2005 | University of Washington | |
| 3 | 98 | June-Reg | Mike Dean | C | 20 | 5-11 | 190 | R | R | A+ | | Oral Roberts University | |
| 4 | 128 | June-Reg | Joshua Santos | P | 21 | 6-1 | 215 | L | L | A+ | | University of Connecticut | |
| 5 | 158 | June-Reg | Ryan Vogelsong | P | 20 | 6-3 | 195 | R | R | MLB | 2000-2006 | Kutztown University | |
| 6 | 188 | June-Reg | Jake Esteves | P | 22 | 6-1 | 190 | R | R | AA | | Louisiana State University | |
| 7 | 218 | June-Reg | Doug Clark | OF | 22 | 6-2 | 200 | L | R | MLB | 2005-2006 | University of Massachusetts | |
| 8 | 248 | June-Reg | Todd Ozias | P | 21 | 6-1 | 185 | R | R | AA | | University of Miami | |
| 9 | 278 | June-Reg | Cody Ransom | SS | 22 | 6-2 | 190 | R | R | MLB | 2001-2009 | Grand Canyon University | |
| 10 | 308 | June-Reg | Chris Jackson | P | 18 | 6-1 | 190 | R | R | A- | | Wasson (Colorado Springs,CO) | |
| 11 | 338 | June-Reg | Erasmo Ramirez | P | 19 | 6-0 | 180 | L | L | MLB | 2003-2007 | Cal State Fullerton | |
| 12 | 368 | June-Reg | Randy Goodrich | P | 21 | 6-4 | 210 | R | R | AA | | Fresno State University | |
| 13 | 398 | June-Reg | John Summers | 1B | 21 | 6-0 | 195 | B | R | AAA | | University of Utah | |
| 14 | 428 | June-Reg | Michael Huller | P | 20 | 6-1 | 190 | R | L | A+ | | George Mason University | |
| 15 | 458 | June-Reg | Jeffrey Allen | OF | 22 | 6-1 | 190 | R | R | AA | | Illinois State University | |
| 16 | 488 | June-Reg | Erik Mattern | SS | 22 | 5-10 | 175 | R | R | A- | | University of Arizona | |
| 17 | 518 | June-Reg | Joe Ojeda | P | 21 | 6-4 | 210 | R | R | A- | | University of St. Francis | |
| 18 | 548 | June-Reg | Dave Brous | P | 18 | 6-2 | 190 | L | L | A+ | | Del Norte (Crescent City,CA) | |
| 19 | 578 | June-Reg | Ben Quick | P | 19 | 6-2 | 185 | R | R | A+ | | Riverside Community College | |
| 20 | 608** | June-Reg | Santiago Narciandi | C | | | 0 | | | - | | Miami Senior (Miami,FL) | |
| 21 | 638 | June-Reg | Benji Miller | P | 22 | 6-2 | 180 | R | R | AA | | Liberty University | |
| 22 | 668 | June-Reg | Theodore Sutton | P | 18 | | 0 | | | Ind | | Colton (Colton,CA) | |
| 23 | 698 | June-Reg | Jake Mapes | C | 19 | 6-4 | 210 | R | R | A+ | - | Riverside Community College | |
| 24 | 728** | June-Reg | Kenneth Trapp | P | | | 0 | | | Ind | | Alvin Community College | |
| 25 | 758** | June-Reg | Oscar Vargas | | 18 | 5-11 | 175 | R | R | Ind | | Logan (Union City,CA) | |
| 26 | 788** | June-Reg | Jason Barrow | OF | | | 0 | | | - | | Canby (Canby,OR) | |
| 27 | 818 | June-Reg | Steve Hill | SS | 22 | 5-10 | 180 | B | R | A+ | | Oklahoma State University | |
| 28 | 848 | June-Reg | Chad Ertel | | | | | | | College | | Elmira District (St. Clements,Canada) | |
| 29 | 878** | June-Reg | Kyle Middleton | P | 18 | 6-5 | 230 | R | R | AAA | | Escambia (Pensacola,FL) | |
| 30 | 908** | June-Reg | Grant Abrams | SS | 18 | 6-0 | 180 | R | R | A- | | Tarpon Springs (Tarpon Springs,FL) | |
| 31 | 938** | June-Reg | Cade Sanchez | P | 21 | 6-0 | 205 | L | R | A+ | | University of Texas | |
| 32 | 968** | June-Reg | Jackson Markert | P | 19 | 6-6 | 215 | R | R | AA | | Connors State College | $0 |
| 33 | 998 | June-Reg | Ryan Gonzales | P | | | 0 | | | - | | Riverside Community College | |
| 34 | 1028 | June-Reg | Travis McGreal | P | | | 0 | | | - | | Heritage (Littleton,CO) | |
| 35 | 1058** | June-Reg | Matthew Dryer | 3B | 18 | 6-2 | 190 | R | R | AA | | McQuaid Jesuit (Rochester,NY) | |
| 36 | 1088 | June-Reg | Josh Souza | P | | | 0 | | | - | | Turlock (Turlock,CA) | |
| 37 | 1118 | June-Reg | Dan Kelly | P | | | | | | - | | Northwest Florida State College | |
| 38 | 1148** | June-Reg | Winston Woods | CF | | | 0 | | | - | | Coral Shores (Tavernier,FL) | |
| 39 | 1178 | June-Reg | Joel Vasquez | OF | | | 0 | | | - | | Booker (Sarasota,FL) | |
| 40 | 1208 | June-Reg | Bill Nahorodny | | | | | | | College | | Clearwater (Clearwater,FL) | |
| 41 | 1238 | June-Reg | Marcellus Presley | OF | | | 0 | | | - | | Sacramento State | |
| 42 | 1267 | June-Reg | Carlos Frazier | OF | 19 | 5-9 | 175 | R | R | A- | | Smackover (Smackover,AR) | |
| 43 | 1295** | June-Reg | Scott Goodman | LF | 20 | 6-1 | 210 | L | L | A+ | | Cuesta College | |
| 44 | 1321 | June-Reg | Dorian Cameron | 2B | | 6-1 | 185 | R | R | Ind | | Coastal Carolina University | |
| 45 | 1345 | June-Reg | Cody Sudbeck | P | | | 0 | | | - | | Tyler Junior College | |