| 1 | 1 | June-Reg | Pat Burrell | 1B | 21 | 6-4 | 225 | R | R | MLB | 2000-2009 | University of Miami | $3,150,000 |
| 1 | 42 | June-Reg | Eric Valent | OF | 21 | 6-0 | 191 | L | L | MLB | 2001-2005 | UCLA | $615,000 |
| 2 | 44 | June-Reg | Brad Baisley | P | 18 | 6-9 | 205 | R | R | AA | | Land O'Lakes (Land O'Lakes,FL) | $700,000 |
| 3 | 74 | June-Reg | Jorge Padilla | OF | 18 | 6-2 | 200 | R | R | MLB | 2009-2009 | Florida Air Academy (Melbourne,FL) | |
| 4 | 104 | June-Reg | Jason Michaels | OF | 22 | 6-0 | 205 | R | R | MLB | 2001-2009 | University of Miami | |
| 5 | 134 | June-Reg | Kennon Mcarthur | C | 18 | 6-3 | 196 | B | R | A | | Sylacauga (Sylacauga,AL) | |
| 6 | 164** | June-Reg | Tommy Whiteman | SS | 18 | 6-3 | 175 | R | R | AAA | | Midwest City (Midwest City,OK) | |
| 7 | 194 | June-Reg | Jarrod Lawson | P | 19 | 6-4 | 190 | R | R | A | | Potosi (Potosi,MO) | |
| 8 | 224 | June-Reg | Mike Wilson | P | 18 | 6-6 | 220 | R | R | AA | | Granite Hills (El Cajon,CA) | |
| 9 | 254 | June-Reg | Ryan Madson | P | 17 | 6-6 | 180 | L | R | MLB | 2003-2009 | Valley View (Moreno Valley,CA) | |
| 10 | 284 | June-Reg | Ken Westmoreland | P | 23 | 6-1 | 215 | R | R | A+ | | University of Alabama | |
| 11 | 314 | June-Reg | Ben Jewson | 3B | 19 | 6-3 | 205 | R | R | Rookie | | Waukesha North (Waukesha,WI) | |
| 12 | 344 | June-Reg | Ian Rauls | OF | 20 | 6-2 | 170 | L | L | A- | | Old Dominion University | |
| 13 | 374** | June-Reg | Adam Peterson | P | 19 | 6-3 | 220 | R | R | MLB | 2004-2004 | Oconto Falls (Oconto Falls,WI) | |
| 14 | 404 | June-Reg | Greg Kubes | P | 21 | 6-6 | 205 | L | L | AAA | | Sam Houston State University | |
| 15 | 434 | June-Reg | Geoff Geary | P | 21 | 6-0 | 176 | R | R | MLB | 2003-2009 | University of Oklahoma | |
| 16 | 464 | June-Reg | John Pilato | P | 20 | 6-3 | 180 | R | R | A | | Villanova (Rochester,NY) | |
| 17 | 494 | June-Reg | Chip Denure | SS | 22 | 6-0 | 190 | R | R | A- | | Ripon College | |
| 18 | 524 | June-Reg | Nate Espy | IF | 20 | 6-3 | 215 | R | R | AAA | | Lurleen (Pensacola,FL) | |
| 19 | 554 | June-Reg | Jeremy Salazar | C | 22 | 6-0 | 190 | R | R | AAA | | Florida State University | |
| 20 | 584 | June-Reg | Jeremy Wedel | P | 21 | 6-0 | 190 | R | R | AAA | | Wasco Union (Wasco,CA) | |
| 21 | 614 | June-Reg | Nick Punto | SS | 20 | 5-9 | 170 | B | R | MLB | 2001-2009 | Saddleback (Santa Ana,CA) | |
| 22 | 644 | June-Reg | Matt Bailie | P | 22 | 5-10 | 190 | R | R | AAA | | Oregon State University | |
| 23 | 674 | June-Reg | Cary Hiles | P | 22 | 5-10 | 170 | R | R | AAA | | University of Memphis | |
| 24 | 704 | June-Reg | Mike Carnes | OF | 21 | 6-2 | 200 | L | L | A | | University of Alabama | |
| 25 | 734** | June-Reg | Aric Leclair | P | 20 | 6-0 | 190 | L | L | AA | | Crowder College | |
| 26 | 764 | June-Reg | Michael Zipser | P | 21 | 6-0 | 200 | R | R | A- | | UNLV | |
| 27 | 794 | June-Reg | Ronald McGinnis | C | 21 | 6-3 | 215 | R | R | A- | | University of Texas | |
| 28 | 824 | June-Reg | Chris Maness | P | 22 | 6-2 | 195 | R | R | A+ | | Elon University | |
| 29 | 854 | June-Reg | Andrew Wiedl | P | 22 | 6-3 | 200 | R | L | A- | | Winona State University | |
| 30 | 884 | June-Reg | James Blackmon | P | | | 0 | | | - | | University of North Carolina | |
| 31 | 914 | June-Reg | Buzz Hannahan | 2B | 22 | 6-2 | 182 | R | R | AAA | | St. Thomas (MN) | |
| 32 | 944** | June-Reg | Abraham Ayala | C | 17 | 6-1 | 190 | R | R | A- | | Discipulos De Cristo (Bayamon,PR) | |
| 33 | 974 | June-Reg | Wes Rachels | 1B-OF | 22 | 5-9 | 180 | R | R | AA | | USC | |
| 34 | 1004 | June-Reg | David Ciesla | P | 21 | 6-0 | 190 | L | L | A- | | Arkansas Tech University | |
| 35 | 1034** | June-Reg | Pete Montrenes | | 18 | 6-3 | 190 | R | R | Ind | | Ocean View (Huntington Beach,CA) | |
| 36 | 1064 | June-Reg | Roger Rodeheaver | 1B | 21 | 6-2 | 215 | R | R | A- | | Indiana University | |
| 37 | 1094 | June-Reg | Edward Grammer | P | 22 | 6-4 | 215 | R | R | A- | | Union University | |
| 38 | 1124 | June-Reg | Lance Cooley | SS | 18 | 6-1 | 167 | R | R | - | | Killeen (Killeen,TX) | |
| 39 | 1154 | June-Reg | Jeremy Deitrick | C | 21 | 6-0 | 210 | R | R | A+ | | Penn State University | |
| 40 | 1184 | June-Reg | Todd Henry | P | 19 | 6-2 | 220 | R | R | - | | Bakersfield (Bakersfield,CA) | |
| 41 | 1214 | June-Reg | Tom Donovan | P | 21 | 6-0 | 195 | R | R | A- | | Elon University | |
| 42 | 1244** | June-Reg | Kirk Nordness | OF | 18 | 6-0 | 200 | R | R | A | | Beaverton (Beaverton,OR) | |
| 43 | 1273 | June-Reg | Earnest Graham | OF | | | 0 | | | - | | Mariner (Cape Coral,FL) | |