| 1 | 13 | June-Reg | J.M. Gold | P | 18 | 6-5 | 220 | R | R | A+ | | Toms River North (Toms River,NJ) | $1,675,000 |
| 2 | 56 | June-Reg | Nick Neugebauer | P | 17 | 6-3 | 225 | R | R | MLB | 2001-2002 | Arlington (Riverside,CA) | |
| 3 | 86 | June-Reg | Derry Hammond | OF | 18 | 6-2 | 205 | R | R | A+ | | West Point (West Point,MS) | |
| 4 | 116** | June-Reg | Rhett Parrott | P | 18 | 6-2 | 180 | R | R | AAA | | Northwest (Tunnel Hill,GA) | |
| 5 | 146 | June-Reg | Chris Pine | P | 21 | 6-2 | 210 | R | R | AAA | | Oregon State University | |
| 6 | 176 | June-Reg | Bill Hall | SS | 18 | 6-0 | 175 | R | R | MLB | 2002-2009 | Nettleton (Nettleton,MS) | |
| 7 | 206 | June-Reg | Jason Fox | OF | 21 | 6-2 | 185 | B | R | AA | | Florida Southern College | |
| 8 | 236 | June-Reg | Mike Penney | P | 21 | 6-1 | 190 | R | R | AAA | | USC | |
| 9 | 266 | June-Reg | Ryan Bordenick | 3B | 22 | 6-0 | 210 | R | R | A | | University of South Carolina | |
| 10 | 296 | June-Reg | James Johnson | P | 21 | 6-1 | 175 | B | L | AAA | | University of Arizona | |
| 11 | 326 | June-Reg | Jeff Pickler | 3B | 22 | 6-2 | 180 | L | R | AAA | | University of Tennessee | |
| 12 | 356 | June-Reg | Chris Barton | P | 21 | 6-4 | 214 | R | R | A+ | | University of Connecticut | |
| 13 | 386** | June-Reg | Heath McMurray | P | 19 | 6-3 | 195 | R | R | A | | San Jacinto College | |
| 14 | 416** | June-Reg | Chuck Kegley | P | 18 | 6-3 | 205 | R | R | AA | | Middleburg (Middleburg,FL) | |
| 15 | 446 | June-Reg | Jose Montenegro | | 22 | 6-0 | 185 | R | R | AAA | | University of Oklahoma | |
| 16 | 476 | June-Reg | Hector Guadalupe | SS | | | 0 | | | - | | Arundel Sr. (Caguas,PR) | |
| 17 | 506 | June-Reg | Steve Correa | P | 18 | 6-5 | 255 | L | L | A- | | Elk Grove (Elk Grove,CA) | |
| 18 | 536 | June-Reg | Ricky Lewis | P | | | 0 | | | A | | University of Mississippi | |
| 19 | 566 | June-Reg | Scott Geitz | P | 20 | 6-4 | 190 | R | R | A | | Missouri State University | |
| 20 | 596** | June-Reg | Jeff Becker | | 21 | 6-2 | 200 | R | R | A+ | | Duke University | |
| 21 | 626 | June-Reg | Ryan Poe | P | 20 | 6-2 | 220 | R | R | AA | | Saddleback (Santa Ana,CA) | |
| 22 | 656** | June-Reg | Erik Smallwood | OF | 18 | 5-10 | 180 | L | R | A | | Tate (Cantonment,FL) | |
| 23 | 686 | June-Reg | Elliott Ayala | IF | 19 | 5-9 | 160 | R | R | A+ | | Northeast Tech (Bronx,NY) | |
| 24 | 716 | June-Reg | Fontella Jones | P | 23 | 6-2 | 210 | R | R | A+ | | Mississippi Valley State University | |
| 25 | 746 | June-Reg | Jack Krawczyk | P | 22 | 6-4 | 210 | R | R | AAA | | USC | |
| 26 | 776 | June-Reg | Dan Mathews | P | 22 | 6-0 | 175 | R | R | A+ | | Indiana University of Pennsylvania | |
| 27 | 806 | June-Reg | Jonathan Harraid | P | 22 | 6-0 | 190 | R | R | Rookie | | Sam Houston State University | |
| 28 | 836 | June-Reg | Tyrone Wayne | RF | 22 | 5-9 | 180 | R | R | Ind | | St. John's University | |
| 29 | 866 | June-Reg | Eduardo Figueroa | | 16 | 6-2 | 164 | R | R | AAA | | University of Tennessee | |
| 30 | 896 | June-Reg | Casey Davis | OF | | | | | | - | | Wichita State University | |
| 31 | 926 | June-Reg | Lee Jaramillo | C | 21 | 5-11 | 185 | R | R | A+ | | University of Wisconsin | |
| 32 | 956 | June-Reg | Roberto Maysonet | P | 18 | 6-0 | 175 | R | R | A+ | | | |
| 33 | 986 | June-Reg | Richard Mackiewitz | 1B | 22 | 6-2 | 217 | L | L | AA | | University of North Florida | |
| 34 | 1016 | June-Reg | Curt Kautsch | P | | | 0 | | | - | | University of Texas | |
| 35 | 1046 | June-Reg | Stephen York | OF | | | 0 | | | - | | University of Arizona | |
| 36 | 1076 | June-Reg | William Eaton | | 22 | 6-0 | 170 | R | R | Rookie | | University of South Florida | |
| 37 | 1106** | June-Reg | Al Corbeil | | 19 | 6-0 | 190 | L | R | A+ | | State College of Florida, Manatee-Sarasota | |
| 38 | 1136 | June-Reg | Jonathan Kuelz | P | | | 0 | | | - | | West Lutheran (Minnetonka,MI) | |
| 39 | 1166 | June-Reg | Dustin Wagoner | P | 19 | | 0 | | | - | | Corona (Corona,CA) | |
| 40 | 1196 | June-Reg | Kenneth Harold | C | | | 0 | | | - | | Denham Springs (Denham Springs,LA) | |
| 41 | 1226 | June-Reg | Brian Wojtkowski | OF | | | 0 | | | - | | Peoria (Peoria,AZ) | |
| 42 | 1256 | June-Reg | Christopher Vallette | P | | | 0 | | | - | | Angelina College | |
| 43 | 1284 | June-Reg | Pedro Gavillan | 3B | | | 0 | | | - | | Leonard (Lake Worth,FL) | |
| 44 | 1310** | June-Reg | Jeffrey Eure | 1B | 17 | 6-1 | 200 | L | L | AA | | Upper Dauphin (Elizabethville,PA) | |
| 45 | 1334** | June-Reg | Devin Butler | 1B | | | 0 | | | - | | Key West (Key West,FL) | |
| 46 | 1357 | June-Reg | Nicholas Murphy | P | | | 0 | | | - | | University of Central Florida | |
| 47 | 1379** | June-Reg | Landon Jacobsen | P | 19 | 6-3 | 203 | R | R | AAA | | Trinidad State Junior College | |
| 48 | 1400 | June-Reg | Chad Christianson | | 18 | 6-5 | 215 | L | L | College | | Seabreeze (Daytona Beach,FL) | |
| 49 | 1418 | June-Reg | Nicholas Wash | 3B | | | 0 | | | - | | Picayune (Picayune,MS) | |
| 50 | 1434 | June-Reg | Michael Wojtkowski | OF | | | 0 | | | - | | Peoria (Peoria,AZ) | |