| 1 | 23 | June-Reg | Bubba Crosby | OF | 21 | 5-11 | 185 | L | L | MLB | 2003-2006 | Rice University | $995,000 |
| 2 | 66 | June-Reg | Mike Fischer | P-SS | 21 | 6-4 | 200 | R | R | AA | | University of South Alabama | |
| 3 | 96** | June-Reg | Alex Santos | P | 20 | 6-1 | 201 | R | R | AAA | | University of Miami | |
| 4 | 126 | June-Reg | Eric Riggs | P | 21 | 6-2 | 190 | B | R | AAA | | University of Central Florida | |
| 5 | 156 | June-Reg | Scott Proctor | P | 21 | 6-1 | 198 | R | R | MLB | 2004-2008 | Florida State University | |
| 6 | 186 | June-Reg | Ryan Moskau | 1B | 20 | 6-3 | 210 | R | L | AA | | University of Arizona | |
| 7 | 216 | June-Reg | David Ross | C | 21 | 6-2 | 205 | R | R | MLB | 2002-2009 | University of Florida | |
| 8 | 246 | June-Reg | Thomari Story-Harden | IF | 18 | 6-5 | 205 | R | R | A+ | | El Cerrito (El Cerrito,CA) | |
| 9 | 276 | June-Reg | Joel Williams | P | 18 | 6-1 | 190 | R | R | A- | | Yoncalla (Yoncalla,OR) | |
| 10 | 306 | June-Reg | Lance Caraccioli | P | 20 | 6-4 | 190 | L | L | AAA | | University of Louisiana-Monroe | |
| 11 | 336 | June-Reg | Christian Bridenbaugh | P | | | | | | A+ | | Central (Martinsburg,PA) | |
| 12 | 366 | June-Reg | Juan Taylor | P | 18 | 6-2 | 170 | L | R | Rookie | | Louisa County (Mineral,VA) | |
| 13 | 396** | June-Reg | Charles Thomas | OF | 19 | 6-0 | 190 | L | L | MLB | 2004-2005 | McLane (Fresno,CA) | |
| 14 | 426 | June-Reg | Robb Gorr | IF | 21 | 6-0 | 195 | R | R | AAA | | USC | |
| 15 | 456 | June-Reg | Paul Avery | P | 21 | 5-11 | 180 | R | L | A+ | | Pepperdine University | |
| 16 | 486 | June-Reg | Jim Goelz | IF | 22 | 5-10 | 170 | R | R | AAA | - | New York Institute of Technology | |
| 17 | 516 | June-Reg | Alex Peidra | P | | | 0 | | | - | | Southern (Miami,FL) | |
| 18 | 546 | June-Reg | Tony Richards | C | | | 0 | | | - | | North Dakota State University | |
| 19 | 576 | June-Reg | Jeremy Meccage | P | | | | | | - | | University of Iowa | |
| 20 | 606 | June-Reg | Tim Harrell | P | 22 | 6-4 | 215 | R | R | AA | | Liberty University | |
| 21 | 636 | June-Reg | Jacob Sampson | SS | 19 | 5-9 | 170 | R | R | A- | | Curtis (University Place,WA) | |
| 22 | 666 | June-Reg | Tony Gomes | P | 20 | 6-2 | 190 | R | R | AA | | San Joaquin Memorial (Fresno,CA) | |
| 23 | 696 | June-Reg | Jason Moody | P | 21 | 5-11 | 170 | R | L | A- | | Spartanburg (Spartanburg,SC) | |
| 24 | 726 | June-Reg | Allen Davis | P | 22 | 6-4 | 195 | L | L | AAA | | Northwestern University | |
| 25 | 756 | June-Reg | Michael Barnsby | P | 22 | 6-1 | 185 | R | R | A+ | | University of Massachusetts | |
| 26 | 786 | June-Reg | Matt Greer | C | 22 | 5-11 | 195 | R | R | A- | | Louisiana Tech University | |
| 27 | 816 | June-Reg | Nick Theodorou | 3B | 23 | 5-11 | 182 | B | R | AAA | | UCLA | |
| 28 | 846** | June-Reg | Corry Parrott | CF | 18 | 6-1 | 190 | R | R | Rookie | | Pasadena City College | |
| 29 | 876** | June-Reg | David Baum | P | 18 | 6-2 | 200 | L | L | - | | Martin County (Stuart,FL) | |
| 30 | 906** | June-Reg | Lloyd Turner | IF | 18 | 6-1 | 180 | R | R | AAA | | Hephzibah (Augusta,GA) | |
| 31 | 936** | June-Reg | Paul Brown | P | 19 | 6-1 | 185 | L | L | A | | Citrus College | |
| 32 | 966** | June-Reg | Darren Heal | | 18 | 6-2 | 198 | B | R | Rookie | | Indian River State College | |
| 33 | 996** | June-Reg | Herman Dean | OF | 17 | 6-3 | 190 | R | R | A- | | Monrovia (Monrovia,CA) | |
| 34 | 1025 | June-Reg | Carlos Claudio | SS | | | 0 | | | - | | Ora Wilma (Guaynabo,PR.) | |
| 35 | 1056** | June-Reg | Rashad Parker | | 18 | 5-11 | 180 | R | R | A+ | | Crossroads School (Santa Monica,CA) | |
| 36 | 1086 | June-Reg | Curt Borland | | 18 | 6-2 | 210 | R | R | A | | Centaurus (Broomfield,CO) | |
| 37 | 1116 | June-Reg | Joshua McMillen | OF | | | 0 | | | - | | West Virginia University | |
| 38 | 1146 | June-Reg | Joshua Berndt | P | | | 0 | | | - | | | |
| 39 | 1176 | June-Reg | Marc-Andre Lagace | P | | | 0 | | | - | | Louis Riel (Gloucester,ON) | |
| 40 | 1206 | June-Reg | Clint Hosford | P | 17 | 6-2 | 185 | R | R | A+ | | Carson Graham (North Vancouver,BC) | |
| 41 | 1236 | June-Reg | Douglas Vandecaveye | 3B | | | 0 | | | - | | Tilbury District (Tilbury,ON) | |
| 42 | 1265** | June-Reg | Jahseam George | P | 19 | 6-4 | 220 | L | L | A- | | San Jose State University | |
| 43 | 1293 | June-Reg | Jorge Roman | P | | | 0 | | | - | | Jose de Dieg (Aguadilla,PR.) | |
| 44 | 1319 | June-Reg | Edward Hart | C | | | 0 | | | - | | Grayson Coun. (Round Rock,TX) | |
| 45 | 1343 | June-Reg | Brandon Smith | P | 18 | 6-3 | 196 | R | R | A | | Cypress College | |
| 46 | 1366** | June-Reg | Steve Andrade | P | 20 | 6-1 | 200 | R | R | MLB | 2006-2006 | American River College | |
| 47 | 1387 | June-Reg | Henry Arocho | OF | | | 0 | | | - | | Benito Cerez (Aguadilla,PR) | |
| 48 | 1407 | June-Reg | Chad Marchand | P | | | 0 | | | - | - | Lethbridge Collegiate Institute (Lethbridge,AB) | |
| 49 | 1424 | June-Reg | Wayne Stone | 3B | | | 0 | | | - | | Miller (Fontana,CA) | |
| 50 | 1440** | June-Reg | Blake McGinley | P | 19 | 6-1 | 185 | R | L | AAA | | Bakersfield (Bakersfield,CA) | |