| 1 | 27** | June-Reg | Chip Ambres | OF | 18 | 6-0 | 175 | R | R | MLB | 2005-2008 | | $1,500,000 |
| 2 | 70 | June-Reg | Derek Wathan | SS | 21 | 6-3 | 190 | B | R | AAA | | University of Oklahoma | |
| 3 | 100 | June-Reg | Dave Callahan | H | 19 | 5-10 | 165 | L | R | MLB | 1910-1911 | Palm Bay (Melbourne,FL) | |
| 4 | 130 | June-Reg | Heath Honeycutt | IF | 21 | 6-4 | 205 | R | R | AA | | Georgia Tech | |
| 5 | 160 | June-Reg | Matt Padgett | OF | 20 | 6-2 | 215 | L | L | AAA | | Clemson University | |
| 6 | 190 | June-Reg | Phillip Lowery | | 21 | 6-1 | 205 | L | L | A | | Arizona State University | |
| 7 | 220 | June-Reg | Ryan Harber | P | 21 | 6-2 | 204 | L | L | A+ | | Butler University | |
| 8 | 250 | June-Reg | Marc Sauer | P | 18 | 6-1 | 196 | R | R | A+ | | Bishop Eustace (Pennsauken,NJ) | |
| 9 | 280 | June-Reg | Mike Trussell | | | | | | | Ind | | Menchville (Newport News,VA) | |
| 10 | 310** | June-Reg | Chris Heck | | 21 | 6-4 | 215 | L | L | Rookie | | St. Joseph (St. Joseph,PA) | |
| 11 | 340 | June-Reg | Matt Demarco | 2B | 18 | 6-0 | 172 | L | R | AA | | Gloucester Catholic (Gloucester,NJ) | |
| 12 | 370 | June-Reg | David Noyce | P | 21 | 6-5 | 220 | L | L | AA | | Furman University | |
| 13 | 400 | June-Reg | Paul McCurtain | | 22 | 6-1 | 190 | R | R | AA | | University of Oklahoma | |
| 14 | 430 | June-Reg | Eric Jupe | P | 21 | 6-2 | 170 | R | R | A- | | Schreiner University | |
| 15 | 460 | June-Reg | Heath Kelly | P | 22 | 6-1 | 185 | R | R | AA | | Auburn University | |
| 16 | 490 | June-Reg | John Seaman | P | 21 | 6-4 | 190 | R | R | A+ | | Northwestern University | |
| 17 | 520** | June-Reg | Josh Hochgesang | IF | 21 | 6-3 | 210 | R | R | AA | | Stanford University | |
| 18 | 550** | June-Reg | Adam LaRoche | 1B | 18 | 6-3 | 180 | L | L | MLB | 2004-2009 | Fort Scott (Fort Scott,KS) | |
| 19 | 580 | June-Reg | Wendell Anderson | | | | | | | College | | East Hartford (East Hartford,CT) | |
| 20 | 610 | June-Reg | David Campos | P | 22 | 5-11 | 170 | R | R | A+ | | Freed-Hardeman University | |
| 21 | 640 | June-Reg | Matt Frick | C | 22 | 6-2 | 220 | R | R | A+ | | University of Alabama | |
| 22 | 670 | June-Reg | Mike Wright | C | 22 | 6-2 | 210 | R | R | AAA | | San Jose State University | |
| 23 | 700** | June-Reg | Matt Krabbe | | | | | | | College | | Larkin (Elgin,IL) | |
| 24 | 730 | June-Reg | Terrence Smalls | 2B | 22 | 5-10 | 170 | L | R | A+ | | The Citadel | |
| 25 | 760 | June-Reg | Scott Murphy | | | | | | | College | | Parkview (Liburn,GA) | |
| 26 | 790 | June-Reg | Kevin Olsen | P | 21 | 6-2 | 200 | R | R | MLB | 2001-2003 | University of Oklahoma | |
| 27 | 820 | June-Reg | Willy Hill | OF | 21 | 5-9 | 160 | L | R | A+ | | University of Oklahoma | |
| 28 | 850 | June-Reg | Kevin Ryan | P | 19 | 6-3 | 200 | R | R | A- | | Morton College | |
| 29 | 880 | June-Reg | Drew Niles | SS | 21 | 6-1 | 175 | B | R | AAA | | Bowling Green State University | |
| 30 | 910** | June-Reg | Vince Harrison | 3B | 18 | 5-11 | 200 | R | R | AA | | Princeton (Cincinnati,OH) | |
| 31 | 940** | June-Reg | Jon Topolski | OF | 21 | 5-10 | 188 | L | R | AAA | | Baylor University | |
| 32 | 970 | June-Reg | Randy Rigsby | 3B | 21 | 6-0 | 190 | L | L | AAA | | East Carolina University | |
| 33 | 1000 | June-Reg | John Kocur | P | | | 0 | | | - | | Cooper City (Cooper City,FL) | |
| 34 | 1030 | June-Reg | Mike Bragg | OF | 18 | 6-1 | 205 | R | R | Ind | | | |
| 35 | 1060** | June-Reg | John Moylan | C | 18 | | 0 | | | - | | Sacred Heart University | |
| 36 | 1090 | June-Reg | Christopher Halgren | C | | | 0 | R | R | A- | | Mount Hood Community College | |
| 37 | 1120 | June-Reg | Eric Bernhardt | P | | | 0 | | | - | | Cowley College | |
| 38 | 1150 | June-Reg | Jorge Arceo | P | | | 0 | | | - | | Lincoln (Stockton,CA) | |
| 39 | 1180 | June-Reg | Jeffrey Wagner | OF | | | 0 | | | - | | San Jacinto (Houston,TX) | |
| 40 | 1210 | June-Reg | Julio Rivas | C | 18 | 5-11 | 185 | R | R | A | | University of Washington | |
| 41 | 1240 | June-Reg | Bryan Lee | OF | 17 | 6-2 | 220 | R | R | - | | El Camino (Sacramento,CA) | |
| 42 | 1269 | June-Reg | Daniel Pettit | P | | | 0 | | | - | | North Stafford (Stafford,VA) | |
| 43 | 1297 | June-Reg | Shawn Sabo | P | | | 0 | | | - | | Oswego (Oswego,IL) | |
| 44 | 1322** | June-Reg | Shawn Norris | 3B | 17 | 6-2 | 170 | L | R | AA | | Alta (Sandy,UT) | |
| 45 | 1347 | June-Reg | Peter Selden | | | | | | | College | | Monroe Community College | |
| 46 | 1369 | June-Reg | Greg Mickles | OF | 18 | 5-11 | 180 | L | R | - | | Maple Shade (Maple Shade,NJ) | |
| 47 | 1390 | June-Reg | Aaron Alvarez | C | 18 | 6-3 | 210 | R | R | A+ | | Chattahoochee (Alpharetta,GA) | |
| 48 | 1410 | June-Reg | Rigoberto Orozco | C | 18 | | 0 | | | College | | Capuchino (San Bruno,CA) | |
| 49 | 1427 | June-Reg | Rudy Simpson | | | | | | | College | | Etiwanda (Etiwanda,CA) | |
