| 1 | 18 | June-Reg | Seth Etherton | P | 21 | 6-1 | 200 | R | R | MLB | 2000-2006 | USC | $1,075,000 |
| 2 | 61 | June-Reg | Brandon Emanuel | P | 22 | 6-3 | 210 | R | R | AAA | | Northwestern State University | |
| 3 | 91 | June-Reg | Paul French | | 18 | 6-2 | 220 | R | R | College | | Northgate (Walnut Creek,CA) | |
| 4 | 121 | June-Reg | Brian Oliver | 2B | 21 | 5-10 | 170 | R | R | AA | - | University of California | |
| 5 | 151 | June-Reg | Darren Blakely | OF | 21 | 6-0 | 190 | B | R | AAA | | University of Hawaii | |
| 6 | 181 | June-Reg | Jay Hood | SS | 21 | 6-0 | 185 | R | R | AA | | Georgia Tech | |
| 7 | 211 | June-Reg | Jeff Hundley | P | 21 | 6-2 | 205 | L | L | AAA | | Bowling Green State University | |
| 8 | 241 | June-Reg | Jason Hill | C | 21 | 6-3 | 210 | R | R | AAA | | University of California | |
| 9 | 271 | June-Reg | Kevin Mcclain | P | 20 | 6-4 | 180 | R | R | AA | | University of Central Florida | |
| 10 | 301** | June-Reg | Justin Lehr | P | 20 | 6-1 | 200 | R | R | MLB | 2004-2009 | USC | |
| 11 | 331 | June-Reg | William Mott | OF | 22 | 6-2 | 180 | L | R | AA | | Santa Clara University | |
| 12 | 361 | June-Reg | Ed Welch | OF | 18 | 6-0 | 190 | L | R | A | | West Point Grey (Vancouver,BC) | |
| 13 | 391 | June-Reg | Greg Jacobs | H | 21 | 5-10 | 180 | L | L | AAA | | Cal State Fullerton | |
| 14 | 421 | June-Reg | Jason Huisman | SS | 22 | 6-3 | 195 | R | R | AA | | University of Mississippi | |
| 15 | 451 | June-Reg | Jaime Germaine | 3B | | | 0 | | | - | | Jose Campeche (San Lorenzo,PR) | |
| 16 | 481 | June-Reg | Justin Ross | OF | 21 | 6-2 | 193 | L | L | A+ | | University of Tennessee | |
| 17 | 511 | June-Reg | Doug Bridges | | 21 | 6-2 | 185 | L | L | A+ | | Embry-Riddle University | |
| 18 | 541 | June-Reg | Casey Kelley | 1B | 21 | 6-2 | 220 | L | R | A | | University of Washington | |
| 19 | 571** | June-Reg | Justin Stine | P | 21 | 6-1 | 198 | R | L | A | | University of Missouri | |
| 20 | 601 | June-Reg | Ed Hurtado | P | 21 | 6-1 | 200 | R | R | A- | | University of California-Riverside | |
| 21 | 631 | June-Reg | Oliver Harwas | P | 22 | 6-3 | 210 | R | R | A | | Warner South (Okeechobee,FL) | |
| 22 | 661 | June-Reg | Chad Berryman | P | 21 | 6-3 | 190 | R | R | A+ | | Virginia Commonwealth University | |
| 23 | 691 | June-Reg | Ryan Braun | P | 17 | 6-1 | 200 | R | R | MLB | 2006-2007 | Edison (Fresno,CA) | |
| 24 | 721 | June-Reg | Chris Demouy | P | 22 | 6-1 | 205 | R | L | AAA | | Louisiana State University | |
| 25 | 751 | June-Reg | Tommy Bond | | 22 | 6-4 | 200 | R | R | A- | | University of Florida | |
| 26 | 781 | June-Reg | Josh Shaffer | IF | 18 | 6-1 | 180 | L | R | AA | | Esperanza (Anaheim,CA) | |
| 27 | 811 | June-Reg | Simon Stoner | | | | | | | Ind | | Pasco-Hernando Community College | |
| 28 | 841 | June-Reg | Greg Moore | P | 19 | 6-6 | 215 | R | R | A | | Ohio Wesleyan University | |
| 29 | 871 | June-Reg | Angel Diaz | C | 21 | 6-0 | 198 | R | R | AAA | | University of Tampa | |
| 30 | 901** | June-Reg | Ronte Langs | OF | 19 | 5-10 | 200 | R | R | A+ | | Gulf Coast Community College | |
| 31 | 931 | June-Reg | Mike Leach | P | 22 | 6-3 | 205 | R | R | A- | | University of Florida | |
| 32 | 961 | June-Reg | Ryan Flanagan | P | 19 | 6-2 | 190 | R | R | Rookie | | Gulf Coast (Pittsburgh.) | |
| 33 | 991 | June-Reg | Ken Corley | 1B | 22 | 6-2 | 185 | R | R | Rookie | | University of Arizona | |
| 34 | 1021** | June-Reg | Bobby Crosby | SS | 18 | 6-3 | 195 | R | R | MLB | 2003-2009 | La Quinta (Westminster,CA) | |
| 35 | 1051** | June-Reg | Ben Margalski | C | 18 | 6-2 | 210 | L | R | A+ | | Belleville (Highridge,MO) | |
| 36 | 1081 | June-Reg | Mike Christensen | 3B | 22 | 6-2 | 190 | R | R | AA | | Florida International University | |
| 37 | 1111 | June-Reg | Matt Tucek | P | | 6-3 | 193 | R | R | - | | Waxahachie (Waxahachie,TX) | |
| 38 | 1141 | June-Reg | Christopher Aronson | P | 22 | 6-0 | 185 | R | R | Rookie | | George Mason University | |
| 39 | 1171 | June-Reg | Brad Downing | OF | 22 | 6-0 | 200 | L | R | A+ | | California (Whittier,CA) | |
| 40 | 1201 | June-Reg | Will Croud | OF | 22 | 5-11 | 170 | B | R | A | | University of Central Florida | |
| 41 | 1231 | June-Reg | Doug Wakefield | P | 21 | 6-7 | 240 | R | L | Ind | | University of California | |
| 42 | 1261 | June-Reg | Matt Lubozynski | P | 21 | 6-3 | 180 | L | L | AAA | | University of Central Florida | |
| 43 | 1289 | June-Reg | Josh Warren | P | 19 | 6-5 | 220 | R | R | Rookie | | Polk State College | |
| 44 | 1315** | June-Reg | Jon Steitz | P | 17 | 6-3 | 210 | R | R | A | | Hopkins School (New Haven,CT) | |
| 45 | 1339** | June-Reg | Cam Esslinger | P | 21 | 5-11 | 170 | R | R | AAA | | Seton Hall University | |
| 46 | 1362 | June-Reg | Mario Mendoza | SS | 19 | 6-3 | 200 | R | R | AAA | | Central Arizona College | |
| 47 | 1383 | June-Reg | Rudy Arguellas | OF | | | 0 | | | A | | Arizona State University | |
| 48 | 1403 | June-Reg | Brian Ferreira | OF | 19 | 6-0 | 185 | L | L | Ind | | State College of Florida, Manatee-Sarasota | |
| 49 | 1420 | June-Reg | Bryn Wade | 2B | 22 | 6-1 | 195 | R | R | A- | | Biola University | |
| 50 | 1436 | June-Reg | Edgardo Salgado | C | | | 0 | | | Rookie | | Florida Air Academy (Melbourne,FL) | |