| 1 | 17 | June-Reg | John Curtice | P | 17 | 6-2 | 228 | L | L | AAA | | Great Bridge (Chesapeake,VA) | $975,000 |
| 1 | 35 | June-Reg | Mark Fischer | OF | 21 | 6-1 | 205 | R | R | AA | | Georgia Tech | $495,000 |
| 2 | 57 | June-Reg | Aaron Capista | SS | 18 | 6-2 | 180 | B | R | AA | | | |
| 2 | 69 | June-Reg | Eric Glaser | P | 19 | 6-6 | 225 | R | R | AA | | Highlands (Fort Thomas,KY) | |
| 3 | 101 | June-Reg | Travis Harper | P | 21 | 6-4 | 195 | L | R | MLB | 2000-2006 | James Madison University | |
| 4 | 131 | June-Reg | Angel Santos | SS | 17 | 5-11 | 185 | B | R | MLB | 2001-2003 | Miguel Melendez Munoz (Cayey,PR) | |
| 5 | 161 | June-Reg | Greg Miller | P | 17 | 6-5 | 215 | L | L | AAA | | Aurora West (Aurora,IL) | |
| 6 | 191** | June-Reg | Kris Wilken | OF | 18 | 5-11 | 195 | B | R | AAA | | El Dorado (Albuquerque,NM) | |
| 7 | 221 | June-Reg | Jeff Taglienti | P | 21 | 6-0 | 205 | R | R | AA | | Tufts University | |
| 8 | 251 | June-Reg | Andy Hazlett | P | 21 | 6-3 | 190 | L | L | AAA | | University of Portland | |
| 9 | 281** | June-Reg | Justin Wayne | P | 18 | 6-3 | 200 | R | R | MLB | 2002-2004 | Punahou (Honolulu,HI) | |
| 10 | 311 | June-Reg | Marty McLeary | P | 22 | 6-5 | 220 | R | R | MLB | 2004-2007 | Mount Vernon Nazarene University | |
| 11 | 341 | June-Reg | Tom Miller | P | 22 | 6-1 | 195 | R | L | A+ | | Ohio University | |
| 12 | 371 | June-Reg | Billy Rich | OF | 20 | 6-2 | 205 | R | R | A | | University of Connecticut | |
| 13 | 401 | June-Reg | Charles Terni | SS | 18 | 5-10 | 170 | R | R | A | | Montville (Uncasville,CT) | |
| 14 | 431 | June-Reg | Chad Alevras | C | 22 | 6-1 | 195 | R | R | A+ | | University of New Mexico | |
| 15 | 461 | June-Reg | Rick O'Dette | p | 21 | 6-3 | 180 | L | L | A | | Saint Joseph's University | |
| 16 | 491 | June-Reg | Jorge DeLeon | 3B | 22 | 6-2 | 164 | R | R | AAA | | University of South Florida | |
| 17 | 521 | June-Reg | Kenny Rayborn | p | 22 | 6-4 | 210 | R | R | Intl | | University of South Alabama | |
| 18 | 551 | June-Reg | Danny Haas | OF | 21 | 5-11 | 180 | L | R | AA | | University of Louisville | |
| 19 | 581 | June-Reg | David Eckstein | 2B | 22 | 5-8 | 165 | R | R | MLB | 2001-2009 | University of Florida | |
| 20 | 611 | June-Reg | Brian Partenheimer | p | 22 | 6-5 | 230 | R | L | A+ | | Indiana University | |
| 21 | 641 | June-Reg | Joe Thomas | p | 22 | 6-3 | 225 | L | L | A+ | | Marietta College | |
| 22 | 671 | June-Reg | Derek Rix | iB | 19 | 6-3 | 208 | L | R | - | | Florida Community College | |
| 23 | 701** | June-Reg | Nate Bump | p | 20 | 6-2 | 185 | R | R | MLB | 2003-2005 | Penn State University | |
| 24 | 731** | June-Reg | Jason Fingers | p | 18 | 6-5 | 180 | R | R | A | | Torrey Pines (San Diego,CA) | |
| 25 | 761 | June-Reg | Chris Domurat | OF | | | | | | - | | Sandwich (Sandwich,MA) | |
| 26 | 791** | June-Reg | Heath McMurray | p | 18 | 6-3 | 195 | R | R | A | | Splendora (Splendora,TX) | |
| 27 | 821** | June-Reg | Justin Fry | p | 20 | 6-3 | 195 | R | R | A+ | | Ohio State University | |
| 28 | 851 | June-Reg | David Sticket | SS | | | | | | - | | Temple Heights Christian (Tampa,FL) | |
| 29 | 881 | June-Reg | Ryan Yeager | SS | | | | | | - | | Port St. Joe (Port St. Joe,FL) | |
| 30 | 911** | June-Reg | Bret Prinz | p | 20 | 6-3 | 185 | R | R | MLB | 2001-2007 | Phoenix College | |
| 31 | 941 | June-Reg | Matt Kamalsky | p | 18 | 6-1 | 185 | R | R | College | | Somerset (Somerset,PA) | |
| 32 | 971 | June-Reg | Robert Hardy | p | | | | | | - | | Countryside (Clearwater,FL) | |
| 33 | 1001 | June-Reg | Pat Santoro | SS | 18 | 6-0 | 195 | R | R | A+ | | Fenwick (Oak Park,IL) | |
| 34 | 1031 | June-Reg | Layne Meyer | p | 19 | 6-6 | 215 | R | R | Ind | | Polk State College | |
| 35 | 1061 | June-Reg | Jason Berni | p | 18 | 6-0 | 200 | R | R | - | | Rancho Bernardo (San Diego,CA) | |
| 36 | 1091 | June-Reg | Ryan Atkinson | p | 18 | 6-6 | 215 | R | R | College | | | |
| 37 | 1121 | June-Reg | Donovan Marbury | p | | | | | | - | | University of Southern Mississippi | |
| 38 | 1151** | June-Reg | Dennis Tankersley | p | 18 | 6-2 | 185 | R | R | MLB | 2002-2004 | St. Charles (St. Charles,MO) | $0 |
| 39 | 1181 | June-Reg | Shawn Weaver | p | | 6-2 | 200 | R | R | - | | Bald Eagle-Nittany (Mill Hall,PA) | |
| 40 | 1211 | June-Reg | Chad Zaucha | of | | | | | | Ind | | Mount Pleasant (Mount Pleasant,PA) | |
| 41 | 1238 | June-Reg | Matthew Slagter | p | | | | | | - | | Jefferson (Tampa,FL) | |
| 42 | 1265** | June-Reg | Scott Candelaria | SS | 18 | 6-2 | 190 | R | R | A+ | | La Cueva (Albuquerque,NM) | |
| 43 | 1289 | June-Reg | Nicholas Gray | SS | | | | | | A- | | Florida State University (Tallahassee,FL) | |
| 44 | 1311 | June-Reg | Todd Smith | 3B | | | | | | - | | Apopka (Apopka,FL) | |
| 45 | 1332** | June-Reg | Joe Thurston | SS | 17 | 5-11 | 175 | L | R | MLB | 2002-2009 | Vallejo (Vallejo,CA) | |