| 1 | 39 | June-Reg | Jason Romano | 3B | 18 | 6-0 | 185 | R | R | MLB | 2002-2005 | Hillsborough (Tampa,FL) | $600,000 |
| 2 | 75 | June-Reg | Jason Grabowski | C | 21 | 6-3 | 200 | L | R | MLB | 2002-2005 | University of Connecticut | |
| 2 | 77 | June-Reg | Chris Tynan | P | 18 | 6-2 | 170 | R | R | A | | Hudson's Bay (Vancouver,WA) | |
| 3 | 107** | June-Reg | Brandon Warriax | SS | 18 | 6-0 | 165 | R | R | AA | | Purnell Swett (Pembroke,NC) | |
| 4 | 137 | June-Reg | Dave Elder | P | 21 | 6-0 | 180 | R | R | MLB | 2002-2003 | Georgia Tech | |
| 5 | 167 | June-Reg | Trey Poland | P | 22 | 6-1 | 190 | L | L | AA | | University of Louisiana at Lafayette | |
| 6 | 197 | June-Reg | Dan DeYoung | P | 21 | 6-0 | 210 | R | R | A+ | | University of Mississippi | |
| 7 | 227 | June-Reg | Mike Lamb | C | 21 | 6-1 | 185 | L | R | MLB | 2000-2008 | Cal State Fullerton | |
| 8 | 257 | June-Reg | Billy Diaz | P | 17 | 6-3 | 180 | R | R | Rookie | | Academia Adventista (Caguas,PR) | |
| 9 | 287 | June-Reg | Carlos Figueroa | P | 17 | 6-1 | 190 | L | L | AA | | Jose Lazaro (Carolina,PR) | |
| 10 | 317 | June-Reg | Kevin Harris | OF | 19 | 6-2 | 220 | R | R | A | | Tampa Bay Tech (Tampa,FL) | |
| 11 | 347 | June-Reg | Tom Sergio | 2B | 22 | 5-9 | 175 | L | R | AAA | | North Carolina State University | |
| 12 | 377 | June-Reg | Corey Wright | OF | 17 | 5-11 | 165 | L | L | AA | | Workman (City of Industry,CA) | |
| 13 | 407 | June-Reg | Robbie Milner | p | 18 | 6-1 | 210 | R | R | A- | | Deer Valley (Glendale,AZ) | |
| 14 | 437 | June-Reg | Jason Torres | C | 18 | 5-10 | 170 | L | R | A | | Carroll (Fort Pierce,FL) | |
| 15 | 467** | June-Reg | Karl Jernigan | SS | 18 | 6-2 | 195 | R | R | A | | Milton (Milton,FL) | |
| 16 | 497 | June-Reg | Kevin Ruedi | p | | | | | | - | | Sacramento City College | |
| 17 | 527 | June-Reg | Geronimo Cruz | OF | 19 | 6-0 | 177 | B | L | A | | Alfred University | |
| 18 | 557** | June-Reg | Jaime Bubela | OF | 19 | 6-1 | 200 | L | R | MLB | 2005-2005 | Cypress Falls (Houston,TX) | |
| 19 | 587 | June-Reg | Travis Hughes | p | 19 | 6-5 | 215 | R | R | MLB | 2004-2006 | Cowley College | |
| 20 | 617 | June-Reg | Jay Signorelli | p | | | 0 | | | - | | Lake Brantley (Altamonte Springs,FL) | |
| 21 | 647 | June-Reg | Jeff Ridenour | p | 20 | 6-3 | 190 | R | R | Ind | | Southern Illinois University-Edwardsville | |
| 22 | 677** | June-Reg | Curtis Gay | 1B | 19 | 6-6 | 225 | L | L | A | | Cowley College | |
| 23 | 707** | June-Reg | Quenten Patterson | p | 19 | 6-3 | 210 | R | R | A | | Blinn College | |
| 24 | 737** | June-Reg | Brian Shipp | SS | 18 | 6-2 | 199 | R | R | AAA | | Central (Baton Rouge,LA) | |
| 25 | 767 | June-Reg | Alex Vazquez | OF | 20 | 6-0 | 170 | R | R | A+ | | Montgomery College | |
| 26 | 797 | June-Reg | Spike Lundberg | p | 20 | 6-1 | 185 | B | R | AAA | | San Diego Mesa College | |
| 27 | 827 | June-Reg | Tanner Herrick | 1B | | | | | | - | | Show Low (Show Low,AZ) | |
| 28 | 857 | June-Reg | Mike Eskildsen | p | | | | | | College | | Maple Ridge (Maple Ridge,BC) | |
| 29 | 887** | June-Reg | Jason Young | p | 17 | 6-5 | 205 | R | R | MLB | 2003-2004 | Berkeley (Berkeley,CA) | |
| 30 | 917 | June-Reg | Derek Hines | OF | 20 | 6-2 | 205 | R | R | Rookie | | Yavapai College | |
| 31 | 947 | June-Reg | David Curtiss | SS | | | | | | - | | Havre (Havre,MT) | |
| 32 | 977 | June-Reg | Jeff Fields | C | | | | | | - | | Alamogordo (Alamogordo,NM) | |
| 33 | 1007** | June-Reg | Mitch Jones | 3B | 19 | 6-1 | 215 | R | R | MLB | 2009-2009 | Utah Valley State College | |
| 34 | 1037 | June-Reg | Devon Younger | p | | | | | | - | | Meridian Community College | |
| 35 | 1067** | June-Reg | Kelley Gulledge | C | 18 | 6-1 | 200 | R | R | AAA | | Mansfield (Arlington,TX) | |
| 36 | 1097 | June-Reg | David Wigley | C | | | | | | - | | Wallace Community College | |
| 37 | 1127** | June-Reg | Blake Allen | p | 17 | 6-4 | 190 | B | R | Rookie | | Benjamin Russell (Alexander City,AL) | |
| 38 | 1157 | June-Reg | Jason Beitey | p | 19 | 6-1 | 170 | R | R | A | | Olympic College | |
| 39 | 1187 | June-Reg | Pete Orr | SS | 18 | 6-1 | 175 | L | R | MLB | 2005-2009 | New Market (Hamilton,ON) | |
| 40 | 1217 | June-Reg | Craig Mosher | p | 18 | 6-0 | 200 | R | L | Ind | | McRoberts (Richmond,BC) | |
| 41 | 1244 | June-Reg | Joshua Hawes | p | | | | | | - | | Community College of Rhode Island | |