| 1 | 20 | June-Reg | Adam Kennedy | SS | 21 | 6-2 | 180 | L | R | MLB | 1999-2009 | Cal State Northridge | $650,000 |
| 2 | 72 | June-Reg | Rick Ankiel | P | 17 | 6-1 | 210 | L | L | MLB | 1999-2009 | Port St. Lucie (Port St. Lucie,FL) | $2,500,000 |
| 3 | 104 | June-Reg | Patrick Coogan | P | 21 | 6-3 | 190 | R | R | AAA | | Louisiana State University | |
| 4 | 134** | June-Reg | Xavier Nady | SS | 18 | 6-2 | 205 | R | R | MLB | 2000-2009 | Salinas (Salinas,CA) | $0 |
| 5 | 164 | June-Reg | Jason Navarro | P | 21 | 6-4 | 220 | L | L | AA | | Tulane University | |
| 6 | 194 | June-Reg | Bryan Rupert | C | 22 | 5-10 | 200 | R | R | A+ | | Limestone College | |
| 7 | 224 | June-Reg | Joe Secoda | 2B | 19 | 6-1 | 190 | R | R | AA | | Santiago Canyon College | |
| 8 | 254 | June-Reg | Jason Karnuth | P | 21 | 6-2 | 190 | R | R | MLB | 2001-2005 | Illinois State University | |
| 9 | 284** | June-Reg | Seth Etherton | P | 20 | 6-1 | 200 | R | R | MLB | 2000-2006 | USC | |
| 10 | 314 | June-Reg | Finley Woodward | P | 21 | 5-11 | 200 | R | R | AA | | Auburn University | |
| 11 | 344 | June-Reg | Reynaldo Torres | 1B | 18 | 6-5 | 235 | R | R | Rookie | | Aurea Quiles (Guanica,PR) | |
| 12 | 374 | June-Reg | Aaron Gentry | SS | 22 | 6-2 | 185 | R | R | A+ | | Berry College | |
| 13 | 404 | June-Reg | Derek Feramisco | OF | 22 | 6-5 | 195 | R | R | AA | | Fresno State University | |
| 14 | 434 | June-Reg | Robbie Macrory | 2B | 22 | 6-1 | 165 | R | R | AA | | Auburn University | |
| 15 | 464** | June-Reg | Jason Michaels | OF | 21 | 6-0 | 205 | R | R | MLB | 2001-2009 | University of Miami | |
| 16 | 494 | June-Reg | Jeremy Lambert | p | 18 | 6-1 | 195 | R | R | AAA | | Kearns (Kearns,UT) | |
| 17 | 524** | June-Reg | Tim Davis | OF | 18 | 6-4 | 230 | L | L | A | | Atkinson County (Pearson,GA) | |
| 18 | 554 | June-Reg | David Kim | OF | 21 | 6-0 | 200 | R | R | A+ | | Seton Hall University | |
| 19 | 584 | June-Reg | Jeff Munster | p | | | | | | - | | Fresno City College | |
| 20 | 614 | June-Reg | Justin Brunette | p | 21 | 6-1 | 200 | L | L | MLB | 2000-2000 | San Diego State University | |
| 21 | 644** | June-Reg | Wes Mccrotty | p | 18 | 6-1 | 190 | L | L | A | | Russellville (Russellville,AR) | |
| 22 | 674 | June-Reg | Tristan Jerue | p | 21 | 6-1 | 185 | R | R | AA | | University of Georgia | |
| 23 | 704 | June-Reg | Chris Martine | C | 21 | 6-2 | 190 | R | R | AA | | George Mason University | |
| 24 | 734 | June-Reg | Jose Rodriguez | p | 22 | 6-1 | 215 | L | L | MLB | 2000-2002 | Florida International University | |
| 25 | 764 | June-Reg | Mike Huffaker | p | 21 | 6-2 | 210 | R | R | AA | | Birmingham-Southern College | |
| 26 | 794 | June-Reg | Craig Hopson | p | 18 | 6-1 | 195 | R | R | Rookie | | Boylan Catholic (Rockford,IL) | |
| 27 | 824 | June-Reg | Luke Quaccia | 1B | 22 | 6-6 | 220 | L | R | A+ | | Stanford University | |
| 28 | 854 | June-Reg | Neal Arnold | p | 22 | 6-5 | 230 | R | R | A | | University of Nebraska-Kearney | |
| 29 | 884 | June-Reg | Derek Gooden | p | 22 | 6-0 | 175 | R | R | A | | Brewton-Parker College | |
| 30 | 914 | June-Reg | Taber Maier | SS | 22 | 6-0 | 180 | R | R | AAA | | Cal Poly | |
| 31 | 944 | June-Reg | Brady Gick | C | | | | | | A- | | Ohio University | |
| 32 | 974 | June-Reg | Andy Kronenberer | 2B | | 6-0 | 185 | L | R | - | | | |
| 33 | 1004 | June-Reg | Blake Ledbetter | C | 20 | 6-2 | 210 | R | R | Rookie | | | |
| 34 | 1034 | June-Reg | Michael Speckhardt | Of | | | | | | A- | | Marist College | |
| 35 | 1064 | June-Reg | Robert Vazquez | 3B | | | | | | A- | | Westmar University | |
| 36 | 1094 | June-Reg | Andy Bevins | Of | 21 | 6-3 | 215 | R | R | AAA | | San Diego State University | |
| 37 | 1124 | June-Reg | Stephen Schaub | Of | | | | | | - | | Cowley College | |
| 38 | 1154 | June-Reg | Carlos Gooden | Of | 18 | 6-1 | 190 | R | R | Rookie | | MacArthur (Houston,TX) | |
| 39 | 1184 | June-Reg | Remer McIntyre | Of | 18 | 5-10 | 180 | R | R | Rookie | | Hillsborough (Tampa,FL) | |
| 40 | 1214 | June-Reg | Scott Wilson | 3B-p | 22 | 6-2 | 200 | R | R | A- | | Tulane University | |
| 41 | 1241 | June-Reg | Doug Gant | p | | | | | | - | | Central (Macon,GA) | |
| 42 | 1268 | June-Reg | Jeremy Weinberg | 3B | 18 | 6-1 | 200 | R | R | College | | Sonora (La Habra,CA) | |
| 43 | 1292** | June-Reg | Cody Getz | p | 18 | 6-8 | 200 | L | L | A- | | Wooster (Reno,NV) | |
| 44 | 1314** | June-Reg | Willie Eyre | p | 18 | 6-1 | 200 | R | R | MLB | 2006-2009 | Snow College | |
| 45 | 1335 | June-Reg | Lionel Rogers | p | | | | | | - | | Fresno City College | |
| 46 | 1354 | June-Reg | Josh Dorminy | 1B | | | | | | College | | Middle Georgia College | |